TY - GEN
T1 - Semantic classification and dependency parsing enabled automated bio-molecular event extraction from text
AU - Ahmed, Syed Toufeeq
AU - Nair, Radhika
AU - Patel, Chintan
AU - Kanwar, Sheela P.
AU - Hakenberg, Jörg
AU - Davulcu, Hasan
PY - 2010
Y1 - 2010
N2 - The last two decades of invigorating research in the area of human genome sequencing marked the beginning of large-scale data collection. Much of the valuable knowledge gained is found in published articles, and thus in un-structured textual form. To aid in searching and extracting knowledge from textual sources, we present BioEve, a fully automated system to extract bio-molecular events from Medline abstracts. BioEve first semantically classifies each sentence to the class type of the event mentioned in the sentence, and then using high coverage, class-specific, hand-crafted rules, it extracts the participants of that event.
AB - The last two decades of invigorating research in the area of human genome sequencing marked the beginning of large-scale data collection. Much of the valuable knowledge gained is found in published articles, and thus in un-structured textual form. To aid in searching and extracting knowledge from textual sources, we present BioEve, a fully automated system to extract bio-molecular events from Medline abstracts. BioEve first semantically classifies each sentence to the class type of the event mentioned in the sentence, and then using high coverage, class-specific, hand-crafted rules, it extracts the participants of that event.
KW - Bio-molecular event extraction
KW - Dependency parsing
KW - Information extraction
KW - Semantic classification
UR - http://www.scopus.com/inward/record.url?scp=77958066309&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=77958066309&partnerID=8YFLogxK
U2 - 10.1145/1854776.1854832
DO - 10.1145/1854776.1854832
M3 - Conference contribution
AN - SCOPUS:77958066309
SN - 9781450304382
T3 - 2010 ACM International Conference on Bioinformatics and Computational Biology, ACM-BCB 2010
SP - 370
EP - 373
BT - 2010 ACM International Conference on Bioinformatics and Computational Biology, ACM-BCB 2010
T2 - 2010 ACM International Conference on Bioinformatics and Computational Biology, ACM-BCB 2010
Y2 - 2 August 2010 through 4 August 2010
ER -