Population Structure of Macaca fascicularis aurea, and their Genetic Relationships with M. f. fascicularis and M. mulatta Determined by 868 RADseq-Derived Autosomal SNPs—A consideration for biomedical research

Poompat Phadphon; Sree Kanthaswamy; Robert F. Oldt; Yuzuru Hamada; Suchinda Malaivijitnond

doi:10.1111/jmp.12554

Population Structure of Macaca fascicularis aurea, and their Genetic Relationships with M. f. fascicularis and M. mulatta Determined by 868 RADseq-Derived Autosomal SNPs—A consideration for biomedical research

Poompat Phadphon, Sree Kanthaswamy, Robert F. Oldt, Yuzuru Hamada, Suchinda Malaivijitnond

Research output: Contribution to journal › Article › peer-review

7 Scopus citations

Abstract

Background: This study examined the population structure of Macaca fascicularis aurea and their genetic relationships with M. f. fascicularis and M. mulatta. Methods: The study analyzed 868 RADseq-derived SNPs from samples representing the entire distribution range of M. f. aurea, including their inter- and intraspecific hybrid zones. Results: The study supports a M. mulatta/Indochinese M. f. fascicularis, Sundaic M. f. fascicularis, and M. f. aurea trichotomy; M. f. aurea was genetically distinct from both forms of M. f. fascicularis and M. mulatta. Hybridization between M. f. aurea and M. f. fascicularis occurred in two directions: south-north (8°25′ to 15°56′) and west-east (98°28′ to 99°02′). Low levels of M. mulatta introgression were also detected in M. f. aurea. Conclusion: This study showcases a complicated scenario of genetic relationships between the M. fascicularis subspecies and between M. fascicularis and M. mulatta and underscores the importance of these taxa's population structure and genetic relationships for biomedical research.

Original language	English (US)
Pages (from-to)	33-44
Number of pages	12
Journal	Journal of Medical Primatology
Volume	51
Issue number	1
DOIs	https://doi.org/10.1111/jmp.12554
State	Published - Feb 2022
Externally published	Yes

ASJC Scopus subject areas

Animal Science and Zoology
General Veterinary

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10.1111/jmp.12554

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Phadphon, P., Kanthaswamy, S., Oldt, R. F., Hamada, Y., & Malaivijitnond, S. (2022). Population Structure of Macaca fascicularis aurea, and their Genetic Relationships with M. f. fascicularis and M. mulatta Determined by 868 RADseq-Derived Autosomal SNPs—A consideration for biomedical research. Journal of Medical Primatology, 51(1), 33-44. https://doi.org/10.1111/jmp.12554

Population Structure of Macaca fascicularis aurea, and their Genetic Relationships with M. f. fascicularis and M. mulatta Determined by 868 RADseq-Derived Autosomal SNPs—A consideration for biomedical research. / Phadphon, Poompat; Kanthaswamy, Sree; Oldt, Robert F. et al.
In: Journal of Medical Primatology, Vol. 51, No. 1, 02.2022, p. 33-44.

Research output: Contribution to journal › Article › peer-review

Phadphon, P, Kanthaswamy, S, Oldt, RF, Hamada, Y & Malaivijitnond, S 2022, 'Population Structure of Macaca fascicularis aurea, and their Genetic Relationships with M. f. fascicularis and M. mulatta Determined by 868 RADseq-Derived Autosomal SNPs—A consideration for biomedical research', Journal of Medical Primatology, vol. 51, no. 1, pp. 33-44. https://doi.org/10.1111/jmp.12554

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abstract = "Background: This study examined the population structure of Macaca fascicularis aurea and their genetic relationships with M. f. fascicularis and M. mulatta. Methods: The study analyzed 868 RADseq-derived SNPs from samples representing the entire distribution range of M. f. aurea, including their inter- and intraspecific hybrid zones. Results: The study supports a M. mulatta/Indochinese M. f. fascicularis, Sundaic M. f. fascicularis, and M. f. aurea trichotomy; M. f. aurea was genetically distinct from both forms of M. f. fascicularis and M. mulatta. Hybridization between M. f. aurea and M. f. fascicularis occurred in two directions: south-north (8°25′ to 15°56′) and west-east (98°28′ to 99°02′). Low levels of M. mulatta introgression were also detected in M. f. aurea. Conclusion: This study showcases a complicated scenario of genetic relationships between the M. fascicularis subspecies and between M. fascicularis and M. mulatta and underscores the importance of these taxa's population structure and genetic relationships for biomedical research.",

author = "Poompat Phadphon and Sree Kanthaswamy and Oldt, {Robert F.} and Yuzuru Hamada and Suchinda Malaivijitnond",

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AB - Background: This study examined the population structure of Macaca fascicularis aurea and their genetic relationships with M. f. fascicularis and M. mulatta. Methods: The study analyzed 868 RADseq-derived SNPs from samples representing the entire distribution range of M. f. aurea, including their inter- and intraspecific hybrid zones. Results: The study supports a M. mulatta/Indochinese M. f. fascicularis, Sundaic M. f. fascicularis, and M. f. aurea trichotomy; M. f. aurea was genetically distinct from both forms of M. f. fascicularis and M. mulatta. Hybridization between M. f. aurea and M. f. fascicularis occurred in two directions: south-north (8°25′ to 15°56′) and west-east (98°28′ to 99°02′). Low levels of M. mulatta introgression were also detected in M. f. aurea. Conclusion: This study showcases a complicated scenario of genetic relationships between the M. fascicularis subspecies and between M. fascicularis and M. mulatta and underscores the importance of these taxa's population structure and genetic relationships for biomedical research.

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