Isotope partitioning of soil respiration: A Bayesian solution to accommodate multiple sources of variability

Kiona Ogle, Elise Pendall

Research output: Contribution to journalArticlepeer-review

20 Scopus citations


Isotopic methods offer great potential for partitioning trace gas fluxes such as soil respiration into their different source contributions. Traditional partitioning methods face challenges due to variability introduced by different measurement methods, fractionation effects, and end-member uncertainty. To address these challenges, we describe a hierarchical Bayesian (HB) approach for isotopic partitioning of soil respiration that directly accommodates such variability. We apply our HB method to data from an experiment conducted in a shortgrass steppe ecosystem, where decomposition was previously shown to be stimulated by elevated CO2. Our approach simultaneously fits Keeling plot (KP) models to observations of soil or soil-respired δ13C and [CO2] obtained via chambers and gas wells, corrects the KP intercepts for apparent fractionation (Δ) due to isotope-specific diffusion rates and/or method artifacts, estimates method- and treatment-specific values for Δ, propagates end-member uncertainty, and calculates proportional contributions from two distinct respiration sources ("old" and "new" carbon). The chamber KP intercepts were estimated with greater confidence than the well intercepts and compared to the theoretical value of 4.4‰, our results suggest that Δ varies between 2 and 5.2‰ depending on method (chambers versus wells) and CO2 treatment. Because elevated CO2 plots were fumigated with 13C-depleted CO2, the source contributions were tightly constrained, and new C accounted for 64% (range = 55-73%) of soil respiration. The contributions were less constrained for the ambient CO2 treatments, but new C accounted for significantly less (47%, range = 15-82%) of soil respiration. Our new HB partitioning approach contrasts our original analysis (higher contribution of old C under elevated CO2) because it uses additional data sources, accounts for end-member bias, and estimates apparent fractionation effects. Key Points A Bayesian approach to isotopic partitioning of soil respiration is described Multiple sources of information are combined to quantify uncertainties Data-informed estimates of apparent fractionation effects are provided

Original languageEnglish (US)
Pages (from-to)221-236
Number of pages16
JournalJournal of Geophysical Research G: Biogeosciences
Issue number2
StatePublished - 2015


  • Bayesian modeling
  • elevated CO experiment
  • end-member uncertainty
  • isotopic partitioning
  • Keeling plots
  • soil respiration

ASJC Scopus subject areas

  • Soil Science
  • Forestry
  • Water Science and Technology
  • Palaeontology
  • Atmospheric Science
  • Aquatic Science
  • Ecology


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