TY - JOUR
T1 - Discovering sparse control strategies in neural activity
AU - Lee, Edward D.
AU - Chen, Xiaowen
AU - Daniels, Bryan C.
N1 - Funding Information:
We acknowledge funding from the Omega Miller Program (https://www.santafe.edu/ research/initiatives/miller-omega-program), National Science Foundation grant PHY1838420 (http://nsf.gov), and Bundesministerium Bildung, Wissenschaft und Forschung, HRSM 2016 (Complexity Science Hub Vienna) (https://www. bmbwf.gv.at). B.C.D. was supported by the ASU–SFI Center for Biosocial Complex Systems (https:// complexity.asu.edu/asu-sfi). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. We would like to thank the UNM Center for Advanced Research Computing, supported in part by the National Science Foundation, for providing high performance computing resources used in this work. We thank Matthew Fricke for invaluable assistance with these resources. We thank the Santa Fe Institute for providing computational resources used for this work. The computational results presented have been achieved in part using the Vienna Scientific Cluster (VSC). We acknowledge K. Hallinen’s help with their data repository. X.C. acknowledges Francesco Randi for insightful discussion.
Funding Information:
bmbwf.gv.at). B.C.D. was supported by the ASU–
Publisher Copyright:
© 2022 Lee et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
PY - 2022/5
Y1 - 2022/5
N2 - Biological circuits such as neural or gene regulation networks use internal states to map sensory input to an adaptive repertoire of behavior. Characterizing this mapping is a major challenge for systems biology. Though experiments that probe internal states are developing rapidly, organismal complexity presents a fundamental obstacle given the many possible ways internal states could map to behavior. Using C. elegans as an example, we propose a protocol for systematic perturbation of neural states that limits experimental complexity and could eventually help characterize collective aspects of the neural-behavioral map. We consider experimentally motivated small perturbations—ones that are most likely to preserve natural dynamics and are closer to internal control mechanisms—to neural states and their impact on collective neural activity. Then, we connect such perturbations to the local information geometry of collective statistics, which can be fully characterized using pairwise perturbations. Applying the protocol to a minimal model of C. elegans neural activity, we find that collective neural statistics are most sensitive to a few principal perturbative modes. Dominant eigenvalues decay initially as a power law, unveiling a hierarchy that arises from variation in individual neural activity and pairwise interactions. Highest-ranking modes tend to be dominated by a few, “pivotal” neurons that account for most of the system’s sensitivity, suggesting a sparse mechanism of collective control.
AB - Biological circuits such as neural or gene regulation networks use internal states to map sensory input to an adaptive repertoire of behavior. Characterizing this mapping is a major challenge for systems biology. Though experiments that probe internal states are developing rapidly, organismal complexity presents a fundamental obstacle given the many possible ways internal states could map to behavior. Using C. elegans as an example, we propose a protocol for systematic perturbation of neural states that limits experimental complexity and could eventually help characterize collective aspects of the neural-behavioral map. We consider experimentally motivated small perturbations—ones that are most likely to preserve natural dynamics and are closer to internal control mechanisms—to neural states and their impact on collective neural activity. Then, we connect such perturbations to the local information geometry of collective statistics, which can be fully characterized using pairwise perturbations. Applying the protocol to a minimal model of C. elegans neural activity, we find that collective neural statistics are most sensitive to a few principal perturbative modes. Dominant eigenvalues decay initially as a power law, unveiling a hierarchy that arises from variation in individual neural activity and pairwise interactions. Highest-ranking modes tend to be dominated by a few, “pivotal” neurons that account for most of the system’s sensitivity, suggesting a sparse mechanism of collective control.
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U2 - 10.1371/journal.pcbi.1010072
DO - 10.1371/journal.pcbi.1010072
M3 - Article
C2 - 35622828
AN - SCOPUS:85131108479
SN - 1553-734X
VL - 18
JO - PLoS computational biology
JF - PLoS computational biology
IS - 5
M1 - e1010072
ER -