Kenneth Buetow

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Kenneth Buetow

Director & Professor

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1983 …2025

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  • 2025

    Genetic Insights into Brain Morphology: a Genome-Wide Association Study of Cortical Thickness and T1-Weighted MRI Gray Matter-White Matter Intensity Contrast

    Kim, N. J., Chowdhury, N. F., Buetow, K. H., Thompson, P. M. & Irimia, A., Apr 2025, In: Neuroinformatics. 23, 2, 26.

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • HCV- and HBV-mediated liver cancer converge on similar transcriptomic landscapes and immune profiles

    Borden, E. S., Jorgensen, A., Natri, H. M., Hastings, K. T., Buetow, K. H. & Wilson, M. A., Jan 9 2025, In: Human Genetics and Genomics Advances. 6, 1, 100373.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    1 Scopus citations

  • Resistance signatures to oncolytic vesiculoviruses in pancreatic ductal adenocarcinoma

    Watters, C. R., Barro, O., Gabere, M., Masuda, M. Y., Elliott, N. M., Raupach, E. A., Ferdous, K. U., Tesfay, M. Z., Moaven, O., Zhou, Y., Barrett, M. T., Buetow, K. H., Nagalo, B. M. & Borad, M. J., Mar 20 2025, In: Molecular Therapy Oncology. 33, 1, 200937.

    Research output: Contribution to journal › Article › peer-review

    Open Access
  • 2024

    Design and implementation of an asynchronous online course-based undergraduate research experience (CURE) in computational genomics

    Plaisier, S. B., Alarid, D. O., Denning, J. A., Brownell, S. E., Buetow, K. H., Cooper, K. M. & Wilson, M. A., Sep 2024, In: PLoS computational biology. 20, 9 September, e1012384.

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • Increases in regional brain volume across two native South American male populations

    Chaudhari, N. N., Imms, P. E., Chowdhury, N. F., Gatz, M., Trumble, B. C., Mack, W. J., Law, E. M., Sutherland, M. L., Sutherland, J. D., Rowan, C. J., Wann, L. S., Allam, A. H., Thompson, R. C., Michalik, D. E., Miyamoto, M., Lombardi, G., Cummings, D. K., Seabright, E., Alami, S. & Garcia, A. R. & 11 others, Rodriguez, D. E., Gutierrez, R. Q., Copajira, A. J., Hooper, P. L., Buetow, K. H., Stieglitz, J., Gurven, M. D., Thomas, G. S., Kaplan, H. S., Finch, C. E. & Irimia, A., Oct 2024, In: GeroScience. 46, 5, p. 4563-4583 21 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • Poor Oral Health Is Associated With Inflammation, Aortic Valve Calcification, and Brain Volume Among Forager-Farmers

    Trumble, B. C., Schwartz, M., Ozga, A. T., Schwartz, G. T., Stojanowski, C. M., Jenkins, C. L., Kraft, T. S., Garcia, A. R., Cummings, D. K., Hooper, P. L., Eid Rodriguez, D., Buetow, K., Beheim, B., Irimia, A., Thomas, G. S., Thompson, R. C., Gatz, M., Stieglitz, J., Finch, C. E. & Gurven, M. & 1 others, Kaplan, H., May 1 2024, In: Journals of Gerontology - Series A Biological Sciences and Medical Sciences. 79, 5, glae013.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    3 Scopus citations
  • 2023

    Apolipoprotein-ε4 is associated with higher fecundity in a natural fertility population

    Trumble, B. C., Charifson, M., Kraft, T., Garcia, A. R., Cummings, D. K., Hooper, P., Lea, A. J., Rodriguez, D. E., Koebele, S. V., Buetow, K., Beheim, B., Minocher, R., Gutierrez, M., Thomas, G. S., Gatz, M., Stieglitz, J., Finch, C. E., Kaplan, H. & Gurven, M., Aug 2023, In: Science Advances. 9, 32, eade9797.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    11 Scopus citations

  • Brain volume, energy balance, and cardiovascular health in two nonindustrial South American populations

    Kaplan, H., Hooper, P. L., Gatz, M., Mack, W. J., Law, E. M., Chui, H. C., Sutherland, M. L., Sutherland, J. D., Rowan, C. J., Wann, L. S., Allam, A. H., Thompson, R. C., Michalik, D. E., Lombardi, G., Miyamoto, M. I., Rodriguez, D. E., Adrian, J. C., Gutierrez, R. Q., Beheim, B. A. & Cummings, D. K. & 10 others, Seabright, E., Alami, S., Garcia, A. R., Buetow, K., Thomas, G. S., Finch, C. E., Stieglitz, J., Trumble, B. C., Gurven, M. D. & Irimia, A., Mar 28 2023, In: Proceedings of the National Academy of Sciences of the United States of America. 120, 13

    Research output: Contribution to journal › Article › peer-review

    Open Access
    8 Scopus citations

  • Characterization of Morreton virus as an oncolytic virotherapy platform for liver cancers

    Nagalo, B. M., Zhou, Y., Loeuillard, E. J., Dumbauld, C., Barro, O., Elliott, N. M., Baker, A. T., Arora, M., Bogenberger, J. M., Meurice, N., Petit, J., Uson, P. L. S., Aslam, F., Raupach, E., Gabere, M., Basnakian, A., Simoes, C. C., Cannon, M. J., Post, S. R. & Buetow, K. & 9 others, Chamcheu, J. C., Barrett, M. T., Duda, D. G., Jacobs, B., Vile, R., Barry, M. A., Roberts, L. R., Ilyas, S. & Borad, M. J., Jun 2023, In: Hepatology. 77, 6, p. 1943-1957 15 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    6 Scopus citations

  • Multi-modal efficacy of a chimeric vesiculovirus expressing the Morreton glycoprotein in sarcoma

    Watters, C. R., Barro, O., Elliott, N. M., Zhou, Y., Gabere, M., Raupach, E., Baker, A. T., Barrett, M. T., Buetow, K. H., Jacobs, B., Seetharam, M., Borad, M. J. & Nagalo, B. M., Jun 15 2023, In: Molecular Therapy Oncolytics. 29, p. 4-14 11 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    2 Scopus citations

  • Natural selection of immune and metabolic genes associated with health in two lowland Bolivian populations

    Lea, A. J., Garcia, A., Arevalo, J., Ayroles, J. F., Buetow, K., Cole, S. W., Rodriguez, D. E., Gutierrez, M., Highland, H. M., Hooper, P. L., Justice, A., Kraft, T., North, K. E., Stieglitz, J., Kaplan, H., Trumble, B. C. & Gurven, M. D., Jan 3 2023, In: Proceedings of the National Academy of Sciences of the United States of America. 120, 1, e2207544120.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    12 Scopus citations

  • Testosterone is positively associated with coronary artery calcium in a low cardiovascular disease risk population

    Tsimane Health and Life History Project Teams, 2023, In: Evolution, Medicine and Public Health. 11, 1, p. 472-484 13 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
  • 2022

    Cell-Free Tumor DNA Dominant Clone Allele Frequency Is Associated with Poor Outcomes in Advanced Biliary Cancers Treated with Platinum-Based Chemotherapy

    Uson Junior, P. L. S., Majeed, U., Yin, J., Botrus, G., Sonbol, M. B., Ahn, D. H., Starr, J. S., Jones, J. C., Babiker, H., Inabinett, S. R., Wylie, N., Boyle, A. W. R., Bekaii-Saab, T. S., Gores, G. J., Smoot, R., Barrett, M., Nagalo, B., Meurice, N., Elliott, N. & Petit, J. & 10 others, Zhou, Y., Arora, M., Dumbauld, C., Barro, O., Baker, A., Bogenberger, J., Buetow, K., Mansfield, A., Mody, K. & Borad, M. J., Jun 1 2022, In: JCO Precision Oncology. 6, 1, e2100274.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    14 Scopus citations

  • FGFR2-IIIb Expression by Immunohistochemistry Has High Specificity in Cholangiocarcinoma with FGFR2 Genomic Alterations

    Uson Junior, P. L. S., DeLeon, T. T., Bogenberger, J. M., Pai, R. K., Kosiorek, H. E., Yin, J., Ahn, D. H., Sonbol, M. B., Bekaii-Saab, T., Mansfield, A. S., Buetow, K., Gores, G. J., Smoot, R., Vasmatzis, G., Kipp, B. R., Mahipal, A., Baker, A. T., Babiker, H., Barro, O. & Dumbauld, C. & 11 others, Zhou, Y., Aslam, F. N., Barrett, M., Jacobs, B., Meurice, N., Arora, M., Petit, J., Elliott, N., Nagalo, B., Salomao, M. A. & Borad, M. J., Aug 2022, In: Digestive Diseases and Sciences. 67, 8, p. 3797-3805 9 p.

    Research output: Contribution to journal › Article › peer-review

    8 Scopus citations

  • High GILT Expression Is Associated with Improved Survival in Metastatic Melanoma Patients Treated with Immune Checkpoint Inhibition

    Adams, A. C., Borden, E. S., Macy, A. M., Thomson, N., Cui, H., Gimbel, M. I., Wilson, M. A., Buetow, K. H., Roe, D. J., Dicaudo, D. J., Homsi, J. & Hastings, K. T., May 1 2022, In: Cancers. 14, 9, 2200.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    4 Scopus citations

  • NeoScore Integrates Characteristics of the Neoantigen:MHC Class I Interaction and Expression to Accurately Prioritize Immunogenic Neoantigens

    Borden, E. S., Ghafoor, S., Buetow, K. H., LaFleur, B. J., Wilson, M. A. & Hastings, K. T., Apr 1 2022, In: Journal of Immunology. 208, 7, p. 1813-1827 15 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    7 Scopus citations

  • Shared gene expression and immune pathway changes associated with progression from nevi to melanoma

    Borden, E. S., Adams, A. C., Buetow, K. H., Wilson, M. A., Bauman, J. E., Curiel-Lewandrowski, C., Chow, H. H. S., Lafleur, B. J. & Hastings, K. T., Jan 1 2022, In: Cancers. 14, 1, 3.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    11 Scopus citations

  • Synergistic combination of cytotoxic chemotherapy and cyclin-dependent kinase 4/6 inhibitors in biliary tract cancers

    Arora, M., Bogenberger, J. M., Abdelrahman, A. M., Yonkus, J., Alva-Ruiz, R., Leiting, J. L., Chen, X., Serrano Uson Junior, P. L., Dumbauld, C. R., Baker, A. T., Gamb, S. I., Egan, J. B., Zhou, Y., Nagalo, B. M., Meurice, N., Eskelinen, E. L., Salomao, M. A., Kosiorek, H. E., Braggio, E. & Barrett, M. T. & 8 others, Buetow, K. H., Sonbol, M. B., Mansfield, A. S., Roberts, L. R., Bekaii-Saab, T. S., Ahn, D. H., Truty, M. J. & Borad, M. J., Jan 2022, In: Hepatology. 75, 1, p. 43-58 16 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    6 Scopus citations

  • The role of Neanderthal introgression in liver cancer

    Taravella Oill, A. M., Buetow, K. H. & Wilson, M. A., Dec 2022, In: BMC Medical Genomics. 15, 1, 255.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    2 Scopus citations
  • 2021

    Apoe4 is associated with elevated blood lipids and lower levels of innate immune biomarkers in a tropical amerindian subsistence population

    Garcia, A. R., Finch, C., Gatz, M., Kraft, T., Rodriguez, D. E., Cummings, D., Charifson, M., Buetow, K., Beheim, B. A., Allayee, H., Thomas, G. S., Stieglitz, J., Gurven, M. D., Kaplan, H. & Trumble, B. C., Sep 2021, In: eLife. 10, e68231.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    39 Scopus citations
  • 2020

    Characteristics of Patients With Chronic Hepatitis B Virus Infection With Genotype E Predominance in Burkina Faso

    Wongjarupong, N., Yonli, A. T., Nagalo, B. M., Djigma, F. W., Somda, S. K., Hassan, M. A., Mohamed, E. A., Sorgho, A. P., Compaore, T. R., Soubeiga, S. T., Kiendrebeogo, I., Sanou, M., Diarra, B., Yang, H. I., Chen, C. J., Ouattara, A. K., Zohoncon, T. M., Martinson, J. J., Buetow, K. & Chamcheu, J. C. & 4 others, Antwi, S. O., Borad, M. J., Simpore, J. & Roberts, L. R., Dec 2020, In: Hepatology Communications. 4, 12, p. 1781-1792 12 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    10 Scopus citations

  • Novel mechanisms of cancer emerge when accounting for sex as a biological variable

    Wilson, M. A. & Buetow, K. H., Jan 1 2020, In: Cancer Research. 80, 1, p. 27-29 3 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    20 Scopus citations

  • The ICTBioMed NCIP Hub: Cancer research in a science gateway consortium

    Saxena, A., Joshi, R., Darbari, H., Mazurek, C., Bhat, A., Srivastava, A., Wojkovich, K., Buetow, K. & Gesing, S., Apr 2020, In: Future Generation Computer Systems. 105, p. 27-32 6 p.

    Research output: Contribution to journal › Article › peer-review

    1 Scopus citations
  • 2019

    Distinct molecular etiologies of male and female hepatocellular carcinoma

    Natri, H. M., Wilson, M. A. & Buetow, K. H., Oct 15 2019, In: BMC Cancer. 19, 1, 951.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    40 Scopus citations

  • High GILT expression and an active and intact MHC class II antigen presentation pathway are associated with improved survival in melanoma

    Buetow, K. H., Meador, L. R., Menon, H., Lu, Y. K., Brill, J., Cui, H., Roe, D. J., DiCaudo, D. J. & Hastings, K. T., Nov 15 2019, In: Journal of Immunology. 203, 10, p. 2577-2587 11 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    28 Scopus citations

  • Neoantigen Fitness Model Predicts Lower Immune Recognition of Cutaneous Squamous Cell Carcinomas Than Actinic Keratoses

    Borden, E. S., Kang, P., Natri, H. M., Phung, T. N., Wilson, M. A., Buetow, K. H. & Hastings, K. T., Nov 29 2019, In: Frontiers in Immunology. 10, 2799.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    8 Scopus citations
  • 2018

    Cell studio: A platform for interactive, 3D graphical simulation of immunological processes

    Liberman, A., Kario, D., Mussel, M., Brill, J., Buetow, K., Efroni, S. & Nevo, U., Jun 1 2018, In: APL Bioengineering. 2, 2, 026107.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    6 Scopus citations
  • 2016

    Quantification of read species behavior within whole genome sequencing of cancer genomes for the stratification and visualization of genomic variation

    Hibsh, D., Buetow, K., Yaari, G. & Efroni, S., May 19 2016, In: Nucleic acids research. 44, 9, e81.

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • Tracking Cancer Genetic Evolution using OncoTrack

    Talukder, A. K., Agarwal, M., Buetow, K. & Denèfle, P. P., Jul 14 2016, In: Scientific reports. 6, 29647.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    5 Scopus citations
  • 2015

    Addition of MR imaging features and genetic biomarkers strengthens glioblastoma survival prediction in TCGA patients

    on behalf of the TCGA Glioma Phenotype Research Group, Jul 1 2015, In: Journal of Neuroradiology. 42, 4, p. 212-221 10 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    111 Scopus citations
  • 2014

    Genome-wide transcriptional sequencing identifies novel mutations in metabolic genes in human hepatocellular carcinoma

    Meerzaman, D. M., Yan, C., Chen, Q. R., Edmonson, M. N., Schaefer, C. F., Clifford, R. J., Dunn, B. K., Dong, L. I., Finney, R. P., Cultraro, C. M., Hu, Y., Yang, Z., Nguyen, C. U. V., Kelley, J. M., Cai, S., Zhang, H., Zhang, J., Wilson, R., Messmer, L. & Chung, Y. H. & 6 others, Kim, J. A., Park, N. H., Lyu, M. S., Song, I. L. H., Komatsoulis, G. & Buetow, K. H., 2014, In: Cancer Genomics and Proteomics. 11, 1, p. 1-12 12 p.

    Research output: Contribution to journal › Article › peer-review

    21 Scopus citations

  • Systematic genetic analysis identifies Cis-eQTL target genes associated with glioblastoma patient survival

    Chen, Q. R., Hu, Y., Yan, C., Buetow, K. & Meerzaman, D., Aug 18 2014, In: PloS one. 9, 8, e105393.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    24 Scopus citations

  • Turning the tide against cancer through sustained medical innovation: The pathway to progress

    Abernethy, A., Abrahams, E., Barker, A., Buetow, K., Burkholder, R., Dalton, W. S., Foti, M., Frueh, F., Gaynor, R. B., Kean, M., Khan, Z., Lessor, T., Lichtenfeld, J. L., Mendelsohn, J. & Van'T Veer, L., 2014, In: Clinical Cancer Research. 20, 5, p. 1081-1086 6 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    25 Scopus citations
  • 2013

    Discovery Analysis of TCGA Data Reveals Association between Germline Genotype and Survival in Ovarian Cancer Patients

    Braun, R., Finney, R., Yan, C., Chen, Q. R., Hu, Y., Edmonson, M., Meerzaman, D. & Buetow, K., Mar 21 2013, In: PloS one. 8, 3, e55037.

    Research output: Contribution to journal › Article › peer-review

    31 Scopus citations

  • Multi-SNP Analysis of GWAS Data Identifies Pathways Associated with Nonalcoholic Fatty Liver Disease

    Chen, Q. R., Braun, R., Hu, Y., Yan, C., Brunt, E. M., Meerzaman, D., Sanyal, A. J. & Buetow, K., Jul 19 2013, In: PloS one. 8, 7, e65982.

    Research output: Contribution to journal › Article › peer-review

    18 Scopus citations

  • Systems analysis utilising pathway interactions identifies sonic hedgehog pathway as a primary biomarker and oncogenic target in hepatocellular carcinoma

    Efroni, S., Meerzaman, D., Schaefer, C. F., Greenblum, S., Soo-Lyu, M., Hu, Y., Cultraro, C., Meshorer, E. & Buetow, K., 2013, In: IET Systems Biology. 7, 6, p. 243-251 9 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    7 Scopus citations

  • Tyrosine kinome sequencing of pediatric acute lymphoblastic leukemia: A report from the Children's Oncology Group TARGET Project

    Loh, M. L., Zhang, J., Harvey, R. C., Roberts, K., Payne-Turner, D., Kang, H., Wu, G., Chen, X., Becksfort, J., Edmonson, M., Buetow, K. H., Carroll, W. L., Chen, I. M., Wood, B., Borowitz, M. J., Devidas, M., Gerhard, D. S., Bowman, P., Larsen, E. & Winick, N. & 6 others, Raetz, E., Smith, M., Downing, J. R., Willman, C. L., Mullighan, C. G. & Hunger, S. P., Jan 17 2013, In: Blood. 121, 3, p. 485-488 4 p.

    Research output: Contribution to journal › Article › peer-review

    150 Scopus citations
  • 2012

    Comprehensive genomic characterization of squamous cell lung cancers

    Hammerman, P. S., Voet, D., Lawrence, M. S., Voet, D., Jing, R., Cibulskis, K., Sivachenko, A., Stojanov, P., McKenna, A., Lander, E. S., Gabriel, S., Getz, G., Imielinski, M., Helman, E., Hernandez, B., Pho, N. H., Meyerson, M., Chu, A., Hye-Chun, J. E. & Mungall, A. J. & 316 others, Pleasance, E., Robertson, A. G., Sipahimalani, P., Stoll, D., Balasundaram, M., Birol, I., Butterfield, Y. S. N., Chuah, E., Coope, R. J. N., Corbett, R., Dhalla, N., Guin, R., He, A., Hirst, C., Hirst, M., Holt, R. A., Lee, D., Li, H. I., Mayo, M., Moore, R. A., Mungall, K., Nip, K. M., Olshen, A., Schein, J. E., Slobodan, J. R., Tam, A., Thiessen, N., Varhol, R., Zeng, T., Zhao, Y., Jones, S. J. M., Marra, M. A., Saksena, G., Cherniack, A. D., Schumacher, S. E., Tabak, B., Carter, S. L., Nguyen, H., Onofrio, R. C., Crenshaw, A., Ardlie, K., Beroukhim, R., Winckler, W., Protopopov, A., Zhang, J., Hadjipanayis, A., Lee, S., Xi, R., Yang, L., Ren, X., Zhang, H., Shukla, S., Chen, P. C., Haseley, P., Lee, E., Chin, L., Park, P. J., Kucherlapati, R., Socci, N. D., Liang, Y., Schultz, N., Borsu, L., Lash, A. E., Viale, A., Sander, C., Ladanyi, M., Auman, J. T., Hoadley, K. A., Wilkerson, M. D., Shi, Y., Liquori, C., Meng, S., Li, L., Turman, Y. J., Topal, M. D., Tan, D., Waring, S., Buda, E., Walsh, J., Jones, C. D., Mieczkowski, P. A., Singh, D., Wu, J., Gulabani, A., Dolina, P., Bodenheimer, T., Hoyle, A. P., Simons, J. V., Soloway, M. G., Stuart, J., Mose, L. E., Jefferys, S. R., Balu, S., O'Connor, B. D., Chiang, D., Liu, J., Chiang, D. Y., Hayes, D. N., Perou, C. M., Cope, L., Weisenberger, D., Danilova, L., Weisenberger, D. J., Maglinte, D. T., Pan, F., Van Den Berg, D. J., Triche, T., Herman, J. G., Baylin, S. B., Laird, P. W., Noble, M., Gehlenborg, N., DiCara, D., Zhang, J., Wu, C. J., Liu, S. Y., Zou, L., Lin, P., Cho, J., Nazaire, M. D., Robinson, J., Thorvaldsdottir, H., Mesirov, J., Sinha, R., Ciriello, G., Cerami, E., Gross, B., Jacobsen, A., Gao, J., Aksoy, B. A., Weinhold, N., Ramirez, R., Taylor, B. S., Antipin, Y., Reva, B., Mo, Q., Seshan, V., Paik, P. K., Akbani, R., Zhang, N., Broom, B. M., Casasent, T., Unruh, A., Wakefield, C., Cason, R. C., Baggerly, K. A., Weinstein, J. N., Haussler, D., Benz, C. C., Stuart, J. M., Zhu, J., Szeto, C., Scott, G. K., Yau, C., Ng, S., Goldstein, T., Waltman, P., Sokolov, A., Collisson, E., Ellrott, K., Collisson, E. A., Zerbino, D., Ma, S., Craft, B., Du, Y., Cabanski, C., Walter, V., Marron, J. S., Liu, Y., Wang, K., Prins, J. F., Creighton, C. J., Zhang, Y., Travis, W. D., Rekhtman, N., Yi, J., Aubry, M. C., Cheney, R., Dacic, S., Flieder, D., Funkhouser, W., Illei, P., Myers, J., Tsao, M. S., Penny, R., Mallery, D., Shelton, T., Hatfield, M., Morris, S., Yena, P., Shelton, C., Sherman, M., Paulauskis, J., Govindan, R., Azodo, I., Beer, D., Bose, R., Byers, L. A., Carbone, D., Chang, L. W., Chun, E., Ding, L., Heymach, J., Ida, C., Johnson, B., Jurisica, I., Kaufman, J., Kosari, F., Kwiatkowski, D., Maher, C. A., Pao, W., Peifer, M., Robertson, G., Rusch, V., Siegfried, J., Sougnez, C., Thomas, R. K., Tomaszek, S., Vaske, C., Wheeler, D., Wigle, D. A., Wilks, C., Zhang, J. J., Jensen, M. A., Sfeir, R., Kahn, A. B., Chu, A. L., Kothiyal, P., Wang, Z., Snyder, E. E., Pontius, J., Pihl, T. D., Backus, M., Walton, J., Baboud, J., Berton, D. L., Nicholls, M. C., Srinivasan, D., Raman, R., Girshik, S., Kigonya, P. A., Alonso, S., Sanbhadti, R. N., Barletta, S. P., Greene, J. M., Pot, D. A., Bandarchi-Chamkhaleh, B., Boyd, J., Weaver, J., Azodo, I. A., Tomaszek, S. C., Yang, P., Brock, M. V., Rogers, K., Rutledge, M., Brown, T., Lee, B., Shin, J., Trusty, D., Dhir, R., Siegfried, J. M., Potapova, O., Fedosenko, K. V., Zakowski, M., Nemirovich-Danchenko, E., Iacocca, M. V., Brown, J., Rabeno, B., Czerwinski, C., Petrelli, N., Fan, Z., Todaro, N., Eckman, J., Rathmell, W. K., Thorne, L. B., Huang, M., Boice, L., Hill, A., Curley, E., Morrison, C., Gaudioso, C., Bartlett, J. M. S., Kodeeswaran, S., Zanke, B., Sekhon, H., David, K., Juhl, H., Le, X. V., Kohl, B., Thorp, R., Tien, N. V., Bang, N. V., Sussman, H., Phu, B. D., Hajek, R., Hung, N. P., Khan, K. Z., Muley, T., Mills Shaw, K. R., Sheth, M., Yang, L., Demchok, J. A., Davidsen, T., Buetow, K., Eley, G., Ferguson, M., Dillon, L. A. L., Schaefer, C., Guyer, M. S., Ozenberger, B. A., Palchik, J. D., Peterson, J., Sofia, H. J., Thomson, E., Johnson, B. E. & Shen, R., Sep 27 2012, In: Nature. 489, 7417, p. 519-525 7 p.

    Research output: Contribution to journal › Article › peer-review

    3282 Scopus citations

  • Comprehensive molecular characterization of human colon and rectal cancer

    Muzny, D. M., Bainbridge, M. N., Chang, K., Dinh, H. H., Drummond, J. A., Fowler, G., Kovar, C. L., Lewis, L. R., Morgan, M. B., Newsham, I. F., Reid, J. G., Santibanez, J., Shinbrot, E., Trevino, L. R., Wu, Y. Q., Wang, M., Gunaratne, P., Donehower, L. A., Creighton, C. J. & Wheeler, D. A. & 293 others, Gibbs, R. A., Lawrence, M. S., Voet, D., Jing, R., Cibulskis, K., Sivachenko, A., Stojanov, P., McKenna, A., Lander, E. S., Gabriel, S., Ding, L., Fulton, R. S., Koboldt, D. C., Wylie, T., Walker, J., Dooling, D. J., Fulton, L., Delehaunty, K. D., Fronick, C. C., Demeter, R., Mardis, E. R., Wilson, R. K., Chu, A., Chun, H. J. E., Mungall, A. J., Pleasance, E., Gordon Robertson, A., Stoll, D., Balasundaram, M., Birol, I., Butterfield, Y. S. N., Chuah, E., Coope, R. J. N., Dhalla, N., Guin, R., Hirst, C., Hirst, M., Holt, R. A., Lee, D., Li, H. I., Mayo, M., Moore, R. A., Schein, J. E., Slobodan, J. R., Tam, A., Thiessen, N., Varhol, R., Zeng, T., Zhao, Y., Jones, S. J. M., Marra, M. A., Bass, A. J., Ramos, A. H., Saksena, G., Cherniack, A. D., Schumacher, S. E., Tabak, B., Carter, S. L., Pho, N. H., Nguyen, H., Onofrio, R. C., Crenshaw, A., Ardlie, K., Beroukhim, R., Winckler, W., Meyerson, M., Protopopov, A., Hadjipanayis, A., Lee, E., Xi, R., Yang, L., Ren, X., Sathiamoorthy, N., Chen, P. C., Haseley, P., Xiao, Y., Lee, S., Seidman, J., Chin, L., Park, P. J., Kucherlapati, R., Todd Auman, J., Hoadley, K. A., Du, Y., Wilkerson, M. D., Shi, Y., Liquori, C., Meng, S., Li, L., Turman, Y. J., Topal, M. D., Tan, D., Waring, S., Buda, E., Walsh, J., Jones, C. D., Mieczkowski, P. A., Singh, D., Wu, J., Gulabani, A., Dolina, P., Bodenheimer, T., Hoyle, A. P., Simons, J. V., Soloway, M., Mose, L. E., Jefferys, S. R., Balu, S., O'Connor, B. D., Prins, J. F., Chiang, D. Y., Neil Hayes, D., Perou, C. M., Hinoue, T., Weisenberger, D. J., Maglinte, D. T., Pan, F., Berman, B. P., Van Den Berg, D. J., Shen, H., Triche, T., Baylin, S. B., Laird, P. W., Getz, G., Noble, M., Voat, D., Gehlenborg, N., Dicara, D., Zhang, J., Zhang, H., Wu, C. J., Liu, S. Y., Shukla, S., Zhou, L., Lin, P., Park, R. W., Nazaire, M. D., Robinson, J., Thorvaldsdottir, H., Mesirov, J., Thorsson, V., Reynolds, S. M., Bernard, B., Kreisberg, R., Lin, J., Iype, L., Bressler, R., Erkkilä, T., Gundapuneni, M., Liu, Y., Norberg, A., Robinson, T., Yang, D., Zhang, W., Shmulevich, I., De Ronde, J. J., Schultz, N., Cerami, E., Ciriello, G., Goldberg, A. P., Gross, B., Jacobsen, A., Gao, J., Kaczkowski, B., Sinha, R., Arman Aksoy, B., Antipin, Y., Reva, B., Shen, R., Taylor, B. S., Ladanyi, M., Sander, C., Akbani, R., Zhang, N., Broom, B. M., Casasent, T., Unruh, A., Wakefield, C., Hamilton, S. R., Craig Cason, R., Baggerly, K. A., Weinstein, J. N., Haussler, D., Benz, C. C., Stuart, J. M., Benz, S. C., Zachary Sanborn, J., Vaske, C. J., Zhu, J., Szeto, C., Scott, G. K., Yau, C., Ng, S., Goldstein, T., Ellrott, K., Collisson, E., Cozen, A. E., Zerbino, D., Wilks, C., Craft, B., Spellman, P., Penny, R., Shelton, T., Hatfield, M., Morris, S., Yena, P., Shelton, C., Sherman, M., Paulauskis, J., Gastier-Foster, J. M., Bowen, J., Ramirez, N. C., Black, A., Pyatt, R., Wise, L., White, P., Bertagnolli, M., Brown, J., Chan, T. A., Chu, G. C., Czerwinski, C., Denstman, F., Dhir, R., Dörner, A., Fuchs, C. S., Guillem, J. G., Iacocca, M., Juhl, H., Kaufman, A., Iii, B. K., Van Le, X., Mariano, M. C., Medina, E. N., Meyers, M., Nash, G. M., Paty, P. B., Petrelli, N., Rabeno, B., Richards, W. G., Solit, D., Swanson, P., Temple, L., Tepper, J. E., Thorp, R., Vakiani, E., Weiser, M. R., Willis, J. E., Witkin, G., Zeng, Z., Zinner, M. J., Zornig, C., Jensen, M. A., Sfeir, R., Kahn, A. B., Chu, A. L., Kothiyal, P., Wang, Z., Snyder, E. E., Pontius, J., Pihl, T. D., Ayala, B., Backus, M., Walton, J., Whitmore, J., Baboud, J., Berton, D. L., Nicholls, M. C., Srinivasan, D., Raman, R., Girshik, S., Kigonya, P. A., Alonso, S., Sanbhadti, R. N., Barletta, S. P., Greene, J. M., Pot, D. A., Shaw, K. R. M., Dillon, L. A. L., Buetow, K., Davidsen, T., Demchok, J. A., Eley, G., Ferguson, M., Fielding, P., Schaefer, C., Sheth, M., Yang, L., Guyer, M. S., Ozenberger, B. A., Palchik, J. D., Peterson, J., Sofia, H. J. & Thomson., E., Jul 19 2012, In: Nature. 487, 7407, p. 330-337 8 p.

    Research output: Contribution to journal › Article › peer-review

    6803 Scopus citations

  • Comprehensive molecular portraits of human breast tumours

    Koboldt, D. C., Fulton, R. S., McLellan, M. D., Schmidt, H., Kalicki-Veizer, J., McMichael, J. F., Fulton, L. L., Dooling, D. J., Ding, L., Mardis, E. R., Wilson, R. K., Ally, A., Balasundaram, M., Butterfield, Y. S. N., Carlsen, R., Carter, C., Chu, A., Chuah, E., Chun, H. J. E. & Coope, R. J. N. & 323 others, Dhalla, N., Guin, R., Hirst, C., Hirst, M., Holt, R. A., Lee, D., Li, H. I., Mayo, M., Moore, R. A., Mungall, A. J., Pleasance, E., Robertson, A. G., Schein, J. E., Shafiei, A., Sipahimalani, P., Slobodan, J. R., Stoll, D., Tam, A., Thiessen, N., Varhol, R. J., Wye, N., Zeng, T., Zhao, Y., Birol, I., Jones, S. J. M., Marra, M. A., Cherniack, A. D., Saksena, G., Onofrio, R. C., Pho, N. H., Carter, S. L., Schumacher, S. E., Tabak, B., Hernandez, B., Gentry, J., Nguyen, H., Crenshaw, A., Ardlie, K., Beroukhim, R., Winckler, W., Getz, G., Gabriel, S. B., Meyerson, M., Chin, L., Kucherlapati, R., Hoadley, K. A., Auman, J. T., Fan, C., Turman, Y. J., Shi, Y., Li, L., Topal, M. D., He, X., Chao, H. H., Prat, A., Silva, G. O., Iglesia, M. D., Zhao, W., Usary, J., Berg, J. S., Adams, M., Booker, J., Wu, J., Gulabani, A., Bodenheimer, T., Hoyle, A. P., Simons, J. V., Soloway, M. G., Mose, L. E., Jefferys, S. R., Balu, S., Parker, J. S., Hayes, D. N., Perou, C. M., Malik, S., Mahurkar, S., Shen, H., Weisenberger, D. J., Triche, T., Lai, P. H., Bootwalla, M. S., Maglinte, D. T., Berman, B. P., Van Den Berg, D. J., Baylin, S. B., Laird, P. W., Creighton, C. J., Donehower, L. A., Noble, M., Voet, D., Gehlenborg, N., Di Cara, D., Zhang, J., Zhang, H., Wu, C. J., Yingchun Liu, S., Lawrence, M. S., Zou, L., Sivachenko, A., Lin, P., Stojanov, P., Jing, R., Cho, J., Sinha, R., Park, R. W., Nazaire, M. D., Robinson, J., Thorvaldsdottir, H., Mesirov, J., Park, P. J., Reynolds, S., Kreisberg, R. B., Bernard, B., Bressler, R., Erkkila, T., Lin, J., Thorsson, V., Zhang, W., Shmulevich, I., Ciriello, G., Weinhold, N., Schultz, N., Gao, J., Cerami, E., Gross, B., Jacobsen, A., Sinha, R., Aksoy, B. A., Antipin, Y., Reva, B., Shen, R., Taylor, B. S., Ladanyi, M., Sander, C., Anur, P., Spellman, P. T., Lu, Y., Liu, W., Verhaak, R. R. G., Mills, G. B., Akbani, R., Zhang, N., Broom, B. M., Casasent, T. D., Wakefield, C., Unruh, A. K., Baggerly, K., Coombes, K., Weinstein, J. N., Haussler, D., Benz, C. C., Stuart, J. M., Benz, S. C., Zhu, J., Szeto, C. C., Scott, G. K., Yau, C., Paull, E. O., Carlin, D., Wong, C., Sokolov, A., Thusberg, J., Mooney, S., Ng, S., Goldstein, T. C., Ellrott, K., Grifford, M., Wilks, C., Ma, S., Craft, B., Yan, C., Hu, Y., Meerzaman, D., Gastier-Foster, J. M., Bowen, J., Ramirez, N. C., Black, A. D., Pyatt, R. E., White, P., Zmuda, E. J., Frick, J., Lichtenberg, T. M., Brookens, R., George, M. M., Gerken, M. A., Harper, H. A., Leraas, K. M., Wise, L. J., Tabler, T. R., McAllister, C., Barr, T., Hart-Kothari, M., Tarvin, K., Saller, C., Sandusky, G., Mitchell, C., Iacocca, M. V., Brown, J., Rabeno, B., Czerwinski, C., Petrelli, N., Dolzhansky, O., Abramov, M., Voronina, O., Potapova, O., Marks, J. R., Suchorska, W. M., Murawa, D., Kycler, W., Ibbs, M., Korski, K., Spychała, A., Murawa, P., Brzeziński, J. J., Perz, H., Łaźniak, R., Teresiak, M., Tatka, H., Leporowska, E., Bogusz-Czerniewicz, M., Malicki, J., Mackiewicz, A., Wiznerowicz, M., Van Le, X., Kohl, B., Viet Tien, N., Thorp, R., Van Bang, N., Sussman, H., Phu, B. D., Hajek, R., Hung, N. P., Phuong, T. V. T., Thang, H. Q., Khan, K. Z., Penny, R., Mallery, D., Curley, E., Shelton, C., Yena, P., Ingle, J. N., Couch, F. J., Lingle, W. L., King, T. A., Gonzalez-Angulo, A. M., Dyer, M. D., Liu, S., Meng, X., Patangan, M., Waldman, F., Stöppler, H., Rathmell, W. K., Thorne, L., Huang, M., Boice, L., Hill, A., Morrison, C., Gaudioso, C., Bshara, W., Daily, K., Egea, S. C., Pegram, M. D., Gomez-Fernandez, C., Dhir, R., Bhargava, R., Brufsky, A., Shriver, C. D., Hooke, J. A., Campbell, J. L., Mural, R. J., Hu, H., Somiari, S., Larson, C., Deyarmin, B., Kvecher, L., Kovatich, A. J., Ellis, M. J., Stricker, T., White, K., Olopade, O., Luo, C., Chen, Y., Bose, R., Chang, L. W., Beck, A. H., Pihl, T., Jensen, M., Sfeir, R., Kahn, A., Chu, A., Kothiyal, P., Wang, Z., Snyder, E., Pontius, J., Ayala, B., Backus, M., Walton, J., Baboud, J., Berton, D., Nicholls, M., Srinivasan, D., Raman, R., Girshik, S., Kigonya, P., Alonso, S., Sanbhadti, R., Barletta, S., Pot, D., Sheth, M., Demchok, J. A., Shaw, K. R. M., Yang, L., Eley, G., Ferguson, M. L., Tarnuzzer, R. W., Zhang, J., Dillon, L. A. L., Buetow, K., Fielding, P., Ozenberger, B. A., Guyer, M. S., Sofia, H. J. & Palchik, J. D., Oct 4 2012, In: Nature. 490, 7418, p. 61-70 10 p.

    Research output: Contribution to journal › Article › peer-review

    9579 Scopus citations

  • Genetic Alterations Activating Kinase and Cytokine Receptor Signaling in High-Risk Acute Lymphoblastic Leukemia

    Roberts, K. G., Morin, R. D., Zhang, J., Hirst, M., Zhao, Y., Su, X., Chen, S. C., Payne-Turner, D., Churchman, M. L., Harvey, R. C., Chen, X., Kasap, C., Yan, C., Becksfort, J., Finney, R. P., Teachey, D. T., Maude, S. L., Tse, K., Moore, R. & Jones, S. & 29 others, Mungall, K., Birol, I., Edmonson, M. N., Hu, Y., Buetow, K. E., Chen, I. M., Carroll, W. L., Wei, L., Ma, J., Kleppe, M., Levine, R. L., Garcia-Manero, G., Larsen, E., Shah, N. P., Devidas, M., Reaman, G., Smith, M., Paugh, S. W., Evans, W. E., Grupp, S. A., Jeha, S., Pui, C. H., Gerhard, D. S., Downing, J. R., Willman, C. L., Loh, M., Hunger, S. P., Marra, M. A. & Mullighan, C. G., Aug 14 2012, In: Cancer cell. 22, 2, p. 153-166 14 p.

    Research output: Contribution to journal › Article › peer-review

    588 Scopus citations

  • Integrated cross-species transcriptional network analysis of metastatic susceptibility

    Hu, Y., Wu, G., Rusch, M., Lukes, L., Buetow, K. H., Zhang, J. & Hunter, K. W., Feb 21 2012, In: Proceedings of the National Academy of Sciences of the United States of America. 109, 8, p. 3184-3189 6 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    47 Scopus citations

  • Life sciences domain analysis model

    Freimuth, R. R., Freund, E. T., Schick, L., Sharma, M. K., Stafford, G. A., Suzek, B. E., Hernandez, J., Hipp, J., Kelley, J. M., Rokicki, K., Pan, S., Buckler, A., Stokes, T. H., Fernandez, A., Fore, I., Buetow, K. H. & Klemm, J. D., Nov 2012, In: Journal of the American Medical Informatics Association. 19, 6, p. 1095-1102 8 p.

    Research output: Contribution to journal › Article › peer-review

    4 Scopus citations

  • The general transcription factor TAF7 is essential for embryonic development but not essential for the survival or differentiation of mature T cells

    Gegonne, A., Tai, X., Zhang, J., Wu, G., Zhu, J., Yoshimoto, A., Hanson, J., Cultraro, C., Chen, Q. R., Guinter, T., Yang, Z., Hathcock, K., Singer, A., Rodriguez-Canales, J., Tessarollo, L., Mackem, S., Meerzaman, D., Buetow, K. & Singer, D. S., May 2012, In: Molecular and cellular biology. 32, 10, p. 1984-1997 14 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    36 Scopus citations
  • 2011

    Bambino: A variant detector and alignment viewer for next-generation sequencing data in the SAM/BAM format

    Edmonson, M. N., Zhang, J., Yan, C., Finney, R. P., Meerzaman, D. M. & Buetow, K. H., Mar 2011, In: Bioinformatics. 27, 6, p. 865-866 2 p., btr032.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    94 Scopus citations

  • CREBBP mutations in relapsed acute lymphoblastic leukaemia

    Mullighan, C. G., Zhang, J., Kasper, L. H., Lerach, S., Payne-Turner, D., Phillips, L. A., Heatley, S. L., Holmfeldt, L., Collins-Underwood, J. R., Ma, J., Buetow, K. H., Pui, C. H., Baker, S. D., Brindle, P. K. & Downing, J. R., Mar 10 2011, In: Nature. 471, 7337, p. 235-241 7 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    529 Scopus citations

  • Detecting cancer gene networks characterized by recurrent genomic alterations in a population

    Efroni, S., Ben-Hamo, R., Edmonson, M., Greenblum, S., Schaefer, C. F. & Buetow, K. H., 2011, In: PloS one. 6, 1, e14437.

    Research output: Contribution to journal › Article › peer-review

    23 Scopus citations

  • Key pathways are frequently mutated in high-risk childhood acute lymphoblastic leukemia: A report from the Children's Oncology Group

    Zhang, J., Mullighan, C. G., Harvey, R. C., Wu, G., Chen, X., Edmonson, M., Buetow, K. H., Carroll, W. L., Chen, I. M., Devidas, M., Gerhard, D. S., Loh, M. L., Reaman, G. H., Relling, M. V., Camitta, B. M., Bowman, W. P., Smith, M. A., Willman, C. L., Downing, J. R. & Hunger, S. P., Sep 15 2011, In: Blood. 118, 11, p. 3080-3087 8 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    228 Scopus citations

  • Pathways of distinction analysis: A new technique for multi-SNP analysis of GWAS data

    Braun, R. & Buetow, K., Jun 2011, In: PLoS genetics. 7, 6, e1002101.

    Research output: Contribution to journal › Article › peer-review

    57 Scopus citations

  • The PathOlogist: An automated tool for pathway-centric analysis

    Greenblum, S. I., Efroni, S., Schaefer, C. F. & Buetow, K. H., May 4 2011, In: BMC bioinformatics. 12, 133.

    Research output: Contribution to journal › Article › peer-review

    34 Scopus citations