Biodesign Institute

Search results

• Additional file 4 of Modulation of gene expression in heart and liver of hibernating black bears (Ursus americanus)

  Showe, M. K. (Contributor), Dorus, S. (Contributor), Yan, J. (Contributor), Stewart, N. C. (Contributor), Barnes, B. M. (Contributor), Karr, T. L. (Contributor), Tøien, Ø. (Contributor), Showe, L. C. (Contributor), Chang, C. (Contributor), Fedorov, V. B. (Contributor), Wilkin, E. C. (Contributor), Wang, H. (Contributor) & Goropashnaya, A. V. (Contributor), figshare Academic Research System, Jan 1 2020

  DOI: 10.6084/m9.figshare.12877099.v1, https://doi.org/10.6084%2Fm9.figshare.12877099.v1

  Dataset

• 5SWE : Ligand-bound structure of adenine riboswitch aptamer domain converted in crystal from its ligand-free state using ligand mixing serial femtosecond crystallography

  Stagno, J. R. (Contributor), Liu, Y. (Contributor), Bhandari, Y. R. (Contributor), Conrad, C. E. (Contributor), Nelson, G. (Contributor), Li, C. (Contributor), Wendel, D. R. (Contributor), White, T. A. (Contributor), Tuckey, R. A. (Contributor), Grant, T. D. (Contributor), Fromme, P. (Contributor), Tan, K. (Contributor), Ji, X. (Contributor), Barty, A. (Contributor), Zatsepin, N. A. (Contributor), Spence, J. C. H. (Contributor) & Wang, Y. (Contributor), RCSB-PDB, 2016

  DOI: 10.2210/pdb5swe/pdb, https://www.rcsb.org/structure/5SWE

  Dataset

• Additional file 1 of Modulation of gene expression in heart and liver of hibernating black bears (Ursus americanus)

  Stewart, N. C. (Contributor), Goropashnaya, A. V. (Contributor), Tøien, Ø. (Contributor), Barnes, B. M. (Contributor), Showe, M. K. (Contributor), Dorus, S. (Contributor), Showe, L. C. (Contributor), Fedorov, V. B. (Contributor), Karr, T. L. (Contributor), Wang, H. (Contributor), Wilkin, E. C. (Contributor), Yan, J. (Contributor) & Chang, C. (Contributor), figshare Academic Research System, Jan 1 2020

  DOI: 10.6084/m9.figshare.12877090.v1, https://doi.org/10.6084%2Fm9.figshare.12877090.v1

  Dataset

• Additional file 1: Table S1. of Occurrence of a novel mastrevirus in sugarcane germplasm collections in Florida, Guadeloupe and RĂŠunion

  Boukari, W. (Contributor), Alcalá-Briseño, R. I. (Contributor), Kraberger, S. (Creator), Fernandez, E. (Creator), Filloux, D. (Creator), Daugrois, J. (Contributor), Comstock, J. C. (Creator), Lett, J. (Contributor), Martin, D. P. (Creator), Varsani, A. (Creator), Roumagnac, P. (Creator), Polston, J. E. (Creator) & Rott, P. C. (Creator), figshare Academic Research System, 2017

  DOI: 10.6084/m9.figshare.c.3838852_d1.v1, https://springernature.figshare.com/articles/dataset/Additional_file_1_Table_S1_of_Occurrence_of_a_novel_mastrevirus_in_sugarcane_germplasm_collections_in_Florida_Guadeloupe_and_R_union/5258143/1

  Dataset

• Additional file 3: Table S3. of Occurrence of a novel mastrevirus in sugarcane germplasm collections in Florida, Guadeloupe and RĂŠunion

  Boukari, W. (Contributor), Alcalá-Briseño, R. I. (Contributor), Kraberger, S. (Creator), Fernandez, E. (Creator), Filloux, D. (Creator), Daugrois, J. (Contributor), Comstock, J. C. (Creator), Lett, J. (Contributor), Martin, D. P. (Creator), Varsani, A. (Creator), Roumagnac, P. (Creator), Polston, J. E. (Creator) & Rott, P. C. (Creator), figshare Academic Research System, 2017

  DOI: 10.6084/m9.figshare.c.3838852_d3.v1, https://springernature.figshare.com/articles/dataset/Additional_file_3_Table_S3_of_Occurrence_of_a_novel_mastrevirus_in_sugarcane_germplasm_collections_in_Florida_Guadeloupe_and_R_union/5258191/1

  Dataset

• Appendix C. The relationships of response ratio of N:P ratio (RRN:P) with that of N pool or P pool (RRNp or RRPp) in cropland, grassland, and forest ecosystems, respectively, under elevated CO2 in different ecosystem types.

  Deng, Q. (Creator), Hui, D. (Contributor), Luo, Y. (Contributor), Elser, J. (Creator), Wang, Y. (Creator), Loladze, I. (Creator), Zhang, Q. (Contributor) & Dennis, S. (Creator), figshare Academic Research System, 2016

  DOI: 10.6084/m9.figshare.3563658.v1, https://wiley.figshare.com/articles/dataset/Appendix_C_The_relationships_of_response_ratio_of_N_P_ratio_RRN_P_with_that_of_N_pool_or_P_pool_RRNp_or_RRPp_in_cropland_grassland_and_forest_ecosystems_respectively_under_elevated_CO2_in_different_ecosystem_types_/3563658/1

  Dataset

• 4RWD : XFEL structure of the human delta opioid receptor in complex with a bifunctional peptide

  Katritch, V. (Contributor), Stevens, R. C. (Contributor), Roth, B. L. (Contributor), Fenalti, G. (Contributor), Zatsepin, N. A. (Contributor), Betti, C. (Contributor), Giguere, P. (Contributor), Han, G. W. (Contributor), Ishchenko, A. (Contributor), Liu, W. (Contributor), Guillemyn, K. (Contributor), Zhang, H. (Contributor), James, D. (Contributor), Wang, D. (Contributor), Weierstall, U. (Contributor), Spence, J. C. H. (Contributor), Boutet, S. (Contributor), Messerschmidt, M. (Contributor), Williams, G. J. (Contributor), Gati, C. (Contributor), Yefanov, O. M. (Contributor), White, T. A. (Contributor), Oberthuer, D. (Contributor), Metz, M. (Contributor), Yoon, C. H. (Contributor), Barty, A. (Contributor), Chapman, H. N. (Contributor), Basu, S. (Contributor), Coe, J. (Contributor), Conrad, C. E. (Contributor), Fromme, R. (Contributor), Fromme, P. (Contributor), Tourwé, D. (Contributor), Schiller, P. W. (Contributor), Ballet, S. (Contributor) & Cherezov, V. (Contributor), RCSB-PDB, 2015

  DOI: 10.2210/pdb4rwd/pdb, https://www.rcsb.org/structure/4RWD

  Dataset

• 4NC3 : Crystal structure of the 5-HT2B receptor solved using serial femtosecond crystallography in lipidic cubic phase.

  Wacker, D. (Contributor), Han, G. W. (Contributor), Basu, S. (Contributor), Messerschmidt, M. (Contributor), Weierstall, U. (Contributor), Liu, W. (Contributor), Katritch, V. (Contributor), Stevens, R. C. (Contributor), Cherezov, V. (Contributor) & Caffrey, M. (Contributor), RCSB-PDB, 2013

  DOI: 10.2210/pdb4nc3/pdb, https://www.rcsb.org/structure/4NC3

  Dataset

• 5UVJ : Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-crystals using Synchrotron Radiation

  Nelson, G. (Contributor), Zatsepin, N. A. (Contributor), Geiger, J. (Contributor), Hilgart, M. C. (Contributor), Subramanian, G. (Contributor), Ishchenko, A. (Contributor), Martin-Garcia, J. M. (Contributor), Kissick, D. (Contributor), Ogata, C. (Contributor), Zook, J. (Contributor), Venugopalan, N. (Contributor), Conrad, C. E. (Contributor), Corcoran, S. (Contributor), Liu, W. (Contributor), Weierstall, U. (Contributor), Zhu, L. (Contributor), Fromme, P. (Contributor), Fischetti, R. F. (Contributor), Coe, J. (Contributor), James, D. (Contributor), Ketwala, G. (Contributor), Spence, J. C. H. (Contributor), Cherezov, V. (Contributor), Schaffer, A. (Contributor), Chun, E. (Contributor), Roy-Chowdhury, S. (Contributor), Ferguson, D. (Contributor), Xu, S. (Contributor), Nagaratnam, N. (Contributor) & Stander, N. (Contributor), RCSB-PDB, 2017

  DOI: 10.2210/pdb5uvj/pdb, https://www.rcsb.org/structure/5UVJ

  Dataset

• Enzyme intermediates captured “on the fly” by mix-and-inject serial crystallography

  Olmos, J. L. (Creator), Pandey, S. (Creator), Martin-Garcia, J. M. (Creator), Calvey, G. (Creator), Katz, A. (Creator), Knoska, J. (Creator), Kupitz, C. (Creator), Hunter, M. S. (Creator), Liang, M. (Contributor), Oberthuer, D. (Creator), Yefanov, O. (Creator), Wiedorn, M. (Creator), Heyman, M. (Creator), Holl, M. (Creator), Pande, K. (Contributor), Barty, A. (Creator), Miller, M. D. (Creator), Stern, S. (Creator), Roy-Chowdhury, S. (Contributor), Coe, J. (Creator), Nagaratnam, N. (Contributor), Zook, J. (Creator), Verburgt, J. (Creator), Norwood, T. (Creator), Poudyal, I. (Contributor), Xu, D. (Creator), Koglin, J. (Creator), Seaberg, M. H. (Creator), Zhao, Y. (Creator), Bajt, S. (Contributor), Grant, T. (Creator), Mariani, V. (Creator), Nelson, G. (Creator), Subramanian, G. (Creator), Bae, E. (Contributor), Fromme, R. (Creator), Fung, R. (Creator), Schwander, P. (Creator), Frank, M. (Creator), White, T. A. (Creator), Weierstall, U. (Creator), Zatsepin, N. (Creator), Spence, J. (Creator), Fromme, P. (Creator), Chapman, H. N. (Creator), Pollack, L. (Creator), Tremblay, L. (Creator), Ourmazd, A. (Creator), Phillips, G. N. (Creator), Schmidt, M. (Creator), Spence, J. (Creator) & Chapman, H. (Creator), figshare Academic Research System, 2018

  DOI: 10.6084/m9.figshare.c.4117712.v1, https://figshare.com/collections/Enzyme_intermediates_captured_on_the_fly_by_mix-and-inject_serial_crystallography/4117712/1

  Dataset

• Appendix A. List of publications used in meta-analyses for plant N and P concentration or pool, N:P ratio, and plant growth under elevated CO2.

  Deng, Q. (Creator), Hui, D. (Contributor), Luo, Y. (Contributor), Elser, J. (Creator), Wang, Y. (Creator), Loladze, I. (Creator), Zhang, Q. (Contributor) & Dennis, S. (Creator), figshare Academic Research System, 2016

  DOI: 10.6084/m9.figshare.3563664.v1, https://wiley.figshare.com/articles/dataset/Appendix_A_List_of_publications_used_in_meta-analyses_for_plant_N_and_P_concentration_or_pool_N_P_ratio_and_plant_growth_under_elevated_CO2_/3563664/1

  Dataset

• 4ZWJ : Crystal structure of rhodopsin bound to arrestin by femtosecond X-ray laser

  Kang, Y. (Contributor), Zhou, X. E. (Contributor), Gao, X. (Contributor), He, Y. (Contributor), Liu, W. (Contributor), Ishchenko, A. (Contributor), Barty, A. (Contributor), White, T. A. (Contributor), Yefanov, O. (Contributor), Han, G. W. (Contributor), Xu, Q. (Contributor), De Waal, P. W. (Contributor), Ke, J. (Contributor), Tan, M. H. E. (Contributor), Zhang, C. (Contributor), Moeller, A. (Contributor), West, G. M. (Contributor), Pascal, B. D. (Contributor), Van Eps, N. (Contributor), Caro, L. N. (Contributor), Vishnivetskiy, S. A. (Contributor), Lee, R. J. (Contributor), Suino-Powell, K. M. (Contributor), Gu, X. (Contributor), Pal, K. (Contributor), Ma, J. (Contributor), Zhi, X. (Contributor), Boutet, S. (Contributor), Williams, G. J. (Contributor), Messerschmidt, M. (Contributor), Gati, C. (Contributor), Zatsepin, N. A. (Contributor), Wang, D. (Contributor), James, D. (Contributor), Basu, S. (Contributor), Roy-Chowdhury, S. (Contributor), Conrad, C. E. (Contributor), Coe, J. (Contributor), Liu, H. (Contributor), Lisova, S. (Contributor), Kupitz, C. (Contributor), Grotjohann, I. (Contributor), Fromme, R. (Contributor), Jiang, Y. (Contributor), Tan, M. (Contributor), Yang, H. (Contributor), Li, J. (Contributor), Wang, M. (Contributor), Zheng, Z. (Contributor), Li, D. (Contributor), Howe, N. (Contributor), Zhao, Y. (Contributor), Standfuss, J. (Contributor), Diederichs, K. (Contributor), Dong, Y. (Contributor), Potter, C. S. (Contributor), Carragher, B. (Contributor), Caffrey, M. (Contributor), Jiang, H. (Contributor), Chapman, H. N. (Contributor), Spence, J. C. H. (Contributor), Fromme, P. (Contributor), Weierstall, U. (Contributor), Ernst, O. P. (Contributor), Katritch, V. (Contributor), Gurevich, V. V. (Contributor), Griffin, P. R. (Contributor), Hubbell, W. L. (Contributor), Stevens, R. C. (Contributor), Cherezov, V. (Contributor), Melcher, K. (Contributor) & Xu, H. E. (Contributor), RCSB-PDB, 2015

  DOI: 10.2210/pdb4zwj/pdb, https://www.rcsb.org/structure/4ZWJ

  Dataset

• Dataset for: Phosphorus accumulates faster than nitrogen globally in freshwater ecosystems under anthropogenic impacts

  Yan, Z. (Contributor), Han, W. (Contributor), Peñuelas, J. (Contributor), Sardans, J. (Creator), Elser, J. (Creator), Du, E. (Contributor), Reich, P. B. (Creator), Fang, J. (Contributor), Wenxuan, H. (Contributor), Penuelas, J. (Creator) & Enzai, D. (Contributor), figshare Academic Research System, 2017

  DOI: 10.6084/m9.figshare.c.3787690.v1, https://figshare.com/collections/Dataset_for_Phosphorus_accumulates_faster_than_nitrogen_globally_in_freshwater_ecosystems_under_anthropogenic_impacts/3787690/1

  Dataset

• Appendix B. List of publications used in meta-analyses for soil phosphatase, labile P, and total P under elevated CO2.

  Deng, Q. (Creator), Hui, D. (Contributor), Luo, Y. (Contributor), Elser, J. (Creator), Wang, Y. (Creator), Loladze, I. (Creator), Zhang, Q. (Contributor) & Dennis, S. (Creator), Figshare, 2016

  DOI: 10.6084/m9.figshare.3563661, https://wiley.figshare.com/articles/dataset/Appendix_B_List_of_publications_used_in_meta-analyses_for_soil_phosphatase_labile_P_and_total_P_under_elevated_CO2_/3563661

  Dataset

• Appendix C. Average values for chlorophyll and seston (C, N, P) concentrations and C:N, C:P, and N:P ratios (molar) for the study lakes.

  Elser, J. (Creator), Kyle, M. (Creator), Steuer, L. (Contributor), Nydick, K. R. (Contributor), Baron, J. S. (Creator) & Steger, L. (Creator), Figshare, 2016

  DOI: 10.6084/m9.figshare.3532172, https://wiley.figshare.com/articles/dataset/Appendix_C_Average_values_for_chlorophyll_and_seston_C_N_P_concentrations_and_C_N_C_P_and_N_P_ratios_molar_for_the_study_lakes_/3532172

  Dataset

• 4PBU : Serial Time-resolved crystallography of Photosystem II using a femtosecond X-ray laser The S1 state

  Kupitz, C. (Contributor), Basu, S. (Contributor), Grotjohann, I. (Contributor), Fromme, R. (Contributor), Zatsepin, N. A. (Contributor), Rendek, K. N. (Contributor), Hunter, M. S. (Contributor), Shoeman, R. L. (Contributor), White, T. A. (Contributor), Wang, D. (Contributor), James, D. (Contributor), Yang, J. (Contributor), Cobb, D. E. (Contributor), Reeder, B. (Contributor), Sierra, R. G. (Contributor), Liu, H. (Contributor), Barty, A. (Contributor), Aquila, A. L. (Contributor), Deponte, D. (Contributor), Kirian, R. (Contributor), Bari, S. (Contributor), Bergkamp, J. J. (Contributor), Beyerlein, K. R. (Contributor), Bogan, M. J. (Contributor), Caleman, C. (Contributor), Chao, T. (Contributor), Conrad, C. E. (Contributor), Davis, K. M. (Contributor), Fleckenstein, H. (Contributor), Galli, L. (Contributor), Hau-Riege, S. P. (Contributor), Kassemeyer, S. (Contributor), Laksmono, H. (Contributor), Liang, M. (Contributor), Lomb, L. (Contributor), Marchesini, S. (Contributor), Martin, A. V. (Contributor), Messerschmidt, M. (Contributor), Milathianaki, D. (Contributor), Nass, K. (Contributor), Ros, A. (Contributor), Roy-Chowdhury, S. (Contributor), Schmidt, K. (Contributor), Seibert, M. (Contributor), Steinbrener, J. (Contributor), Stellato, F. (Contributor), Yan, L. (Contributor), Yoon, C. (Contributor), Moore, T. (Contributor), Moore, A. (Contributor), Pushkar, Y. (Contributor), Williams, G. J. (Contributor), Boutet, S. (Contributor), Doak, R. B. (Contributor), Weierstall, U. (Contributor), Frank, M. (Contributor), Chapman, H. N. (Contributor), Spence, J. C. H. (Contributor) & Fromme, P. (Contributor), RCSB-PDB, 2014

  DOI: 10.2210/pdb4pbu/pdb, https://www.rcsb.org/structure/4PBU

  Dataset

• Cross-system synthesis of consumer and nutrient resource control on producer biomass

  Gruner, D. (Creator), Smith, J. (Creator), Seabloom, E. (Creator), Sandin, S. (Creator), Ngai, J. (Creator), Hillebrand, H. (Creator), Harpole, S. (Creator), Elser, J. (Creator), Cleland, E. (Creator), Bracken, M. (Creator), Borer, E. (Creator) & Bolker, B. (Creator), UC Santa Barbara, 2008

  DOI: 10.5063/aa/nceas.926.6, https://knb.ecoinformatics.org/view/doi:10.5063/AA/nceas.926.6

  Dataset

• Supplement 1. Data used in meta-analyses for plant N and P concentration or pool, N:P ratio, and plant growth under elevated CO2.

  Deng, Q. (Creator), Hui, D. (Contributor), Luo, Y. (Contributor), Elser, J. (Creator), Wang, Y. (Creator), Loladze, I. (Creator), Zhang, Q. (Contributor) & Dennis, S. (Creator), figshare Academic Research System, 2016

  DOI: 10.6084/m9.figshare.3563649.v1, https://wiley.figshare.com/articles/dataset/Supplement_1_Data_used_in_meta-analyses_for_plant_N_and_P_concentration_or_pool_N_P_ratio_and_plant_growth_under_elevated_CO2_/3563649/1

  Dataset

• 4RWA : Synchrotron structure of the human delta opioid receptor in complex with a bifunctional peptide (PSI community target)

  Roth, B. L. (Contributor), Stevens, R. C. (Contributor), Fenalti, G. (Contributor), Zatsepin, N. A. (Contributor), Betti, C. (Contributor), Giguere, P. (Contributor), Han, G. W. (Contributor), Ishchenko, A. (Contributor), Liu, W. (Contributor), Guillemyn, K. (Contributor), Zhang, H. (Contributor), James, D. (Contributor), Wang, D. (Contributor), Weierstall, U. (Contributor), Spence, J. C. H. (Contributor), Boutet, S. (Contributor), Messerschmidt, M. (Contributor), Williams, G. J. (Contributor), Gati, C. (Contributor), Yefanov, O. M. (Contributor), White, T. A. (Contributor), Oberthuer, D. (Contributor), Metz, M. (Contributor), Yoon, C. H. (Contributor), Barty, A. (Contributor), Chapman, H. N. (Contributor), Basu, S. (Contributor), Coe, J. (Contributor), Conrad, C. E. (Contributor), Fromme, R. (Contributor), Fromme, P. (Contributor), Tourwé, D. (Contributor), Schiller, P. W. (Contributor), Ballet, S. (Contributor), Katritch, V. (Contributor) & Cherezov, V. (Contributor), RCSB-PDB, 2015

  DOI: 10.2210/pdb4rwa/pdb, https://www.rcsb.org/structure/4RWA

  Dataset

• Global analysis of nitrogen and phosphorus limitation

  Elser, J. (Creator), KNB Data Repository, 2007

  DOI: 10.5063/aa/nceas.347.3, https://knb.ecoinformatics.org/view/doi:10.5063/AA/nceas.347.3

  Dataset

• Dataset for: Phosphorus accumulates faster than nitrogen globally in freshwater ecosystems under anthropogenic impacts

  Yan, Z. (Contributor), Han, W. (Contributor), Peñuelas, J. (Contributor), Sardans, J. (Creator), Elser, J. (Creator), Du, E. (Contributor), Reich, P. B. (Creator), Fang, J. (Contributor), Wenxuan, H. (Contributor), Penuelas, J. (Creator) & Enzai, D. (Contributor), Figshare, 2017

  DOI: 10.6084/m9.figshare.5039671, https://wiley.figshare.com/articles/dataset/Dataset_for_Phosphorus_accumulates_faster_than_nitrogen_globally_in_freshwater_ecosystems_under_anthropogenic_impacts/5039671

  Dataset

• Appendix D. The relationships of response ratio of N:P ratio (RRN:P) with that of N concentration or P concentration (RRNc or RRPc) in cropland, grassland, and forest ecosystems, respectively, under elevated CO2.

  Deng, Q. (Creator), Hui, D. (Contributor), Luo, Y. (Contributor), Elser, J. (Creator), Wang, Y. (Creator), Loladze, I. (Creator), Zhang, Q. (Contributor) & Dennis, S. (Creator), figshare Academic Research System, 2016

  DOI: 10.6084/m9.figshare.3563655.v1, https://wiley.figshare.com/articles/dataset/Appendix_D_The_relationships_of_response_ratio_of_N_P_ratio_RRN_P_with_that_of_N_concentration_or_P_concentration_RRNc_or_RRPc_in_cropland_grassland_and_forest_ecosystems_respectively_under_elevated_CO2_/3563655/1

  Dataset

• Cross-system synthesis of consumer and nutrient resource control on producer biomass

  Gruner, D. (Creator), Smith, J. (Creator), Seabloom, E. (Creator), Sandin, S. (Creator), Ngai, J. (Creator), Hillebrand, H. (Creator), Harpole, S. (Creator), Elser, J. (Creator), Cleland, E. (Creator), Bracken, M. (Creator), Borer, E. (Creator) & Bolker, B. (Creator), KNB Data Repository, 2008

  DOI: 10.5063/aa/nceas.926.4, https://knb.ecoinformatics.org/view/doi:10.5063/AA/nceas.926.4

  Dataset

• Global analysis of nitrogen and phosphorus limitation

  Elser, J. (Creator), KNB Data Repository, 2007

  DOI: 10.5063/aa/nceas.347.2, https://knb.ecoinformatics.org/view/doi:10.5063/AA/nceas.347.2

  Dataset

• 4QX3 : Cry3A Toxin structure obtained by injecting Bacillus thuringiensis cells in an XFEL beam, collecting data by serial femtosecond crystallographic methods and processing data with the CrystFEL software suite

  Sawaya, M. R. (Contributor), Cascio, D. (Contributor), Gingery, M. (Contributor), Rodriguez, J. (Contributor), Goldschmidt, L. (Contributor), Colletier, J. (Contributor), Messerschmidt, M. (Contributor), Boutet, S. (Contributor), Koglin, J. E. (Contributor), Williams, G. J. (Contributor), Brewster, A. S. (Contributor), Nass, K. (Contributor), Hattne, J. (Contributor), Botha, S. (Contributor), Doak, R. B. (Contributor), Shoeman, R. L. (Contributor), DePonte, D. P. (Contributor), Park, H. (Contributor), Federici, B. A. (Contributor), Sauter, N. K. (Contributor), Schlichting, I. (Contributor) & Eisenberg, D. S. (Contributor), RCSB-PDB, 2014

  DOI: 10.2210/pdb4qx3/pdb, https://www.rcsb.org/structure/4QX3

  Dataset