Biodesign Institute

Search results

• CapsNet-SSP: multilane capsule network for predicting human saliva-secretory proteins

  Du, W. (Creator), Sun, Y. (Creator), Li, G. (Creator), Cao, H. (Creator), Pang, R. (Creator), Li, Y. (Creator) & Gaoyang, L. (Contributor), Figshare, 2020

  DOI: 10.6084/m9.figshare.c.5014838, https://springernature.figshare.com/collections/CapsNet-SSP_multilane_capsule_network_for_predicting_human_saliva-secretory_proteins/5014838

  Dataset

• Asymmetric focused reconstruction of human norovirus GI.7 Houston strain VLP asymmetric unit in T=3 symmetry

  Jung, J. (Contributor), Grant, T. (Contributor), Thomas, D. R. (Contributor), Diehnelt, C. W. (Contributor), Grigorieff, N. (Contributor) & Joshua-Tor, L. (Contributor), Protein Data Bank (PDB), Jun 26 2019

  DOI: 10.2210/pdb6OU9/pdb, https://www.wwpdb.org/pdb?id=pdb_00006ou9

  Dataset

• MOESM1 of Alzheimer’s disease-associated (hydroxy)methylomic changes in the brain and blood

  Lardenoije, R. (Creator), Roubroeks, J. A. Y. (Creator), Pishva, E. (Creator), Leber, M. (Creator), Wagner, H. (Creator), Iatrou, A. (Creator), Smith, A. R. (Creator), Smith, R. G. (Creator), Eijssen, L. M. T. (Creator), Kleineidam, L. (Creator), Kawalia, A. (Creator), Hoffmann, P. (Creator), Luck, T. (Creator), Riedel-Heller, S. (Creator), Jessen, F. (Creator), Maier, W. (Creator), Wagner, M. (Creator), Hurlemann, R. (Creator), Kenis, G. (Creator), Ali, M. (Creator), Del Sol, A. (Contributor), Mastroeni, D. (Creator), Delvaux, E. (Creator), Coleman, P. (Creator), Mill, J. (Creator), Rutten, B. P. F. (Creator), Lunnon, K. (Creator), Ramirez, A. (Creator), Van Den Hove, D. L. A. (Contributor), Riedel-Heller, S. (Creator), Jessen, F. (Creator), Maier, W. (Creator), Ali, M. (Creator), Mill, J. (Creator), Ramirez, A. (Creator) & Hove, D. (Creator), Figshare, 2019

  DOI: 10.6084/m9.figshare.11292989, https://springernature.figshare.com/articles/dataset/MOESM1_of_Alzheimer_s_disease-associated_hydroxy_methylomic_changes_in_the_brain_and_blood/11292989

  Dataset

• MOESM1 of Antigen 85B peptidomic analysis allows species-specific mycobacterial identification

  Zhang, W. (Creator), Shu, Q. (Creator), Zhao, Z. (Creator), Fan, J. (Creator), Lyon, C. J. (Creator), Zelazny, A. M. (Creator) & Hu, Y. (Creator), Figshare, 2018

  DOI: 10.6084/m9.figshare.5768403, https://springernature.figshare.com/articles/presentation/MOESM1_of_Antigen_85B_peptidomic_analysis_allows_species-specific_mycobacterial_identification/5768403

  Dataset

• Quaternary intertidal and supratidal crabs (Decapoda, Brachyura) from tropical America and the systematic affinities of fossil fiddler crabs

  Luque, J. (Creator), Christy, J. H. (Creator), Hendy, A. J. W. (Creator), Rosenberg, M. S. (Creator), Portell, R. W. (Creator), Kerr, K. A. (Creator) & Palmer, A. R. (Contributor), figshare Academic Research System, 2017

  DOI: 10.6084/m9.figshare.5346076.v1, https://tandf.figshare.com/articles/dataset/Quaternary_intertidal_and_supratidal_crabs_Decapoda_Brachyura_from_tropical_America_and_the_systematic_affinities_of_fossil_fiddler_crabs/5346076/1

  Dataset

• Developing methods to detect and diagnose chronic traumatic encephalopathy during life: rationale, design, and methodology for the DIAGNOSE CTE Research Project

  Alosco, M. L. (Creator), Mariani, M. L. (Creator), Adler, C. H. (Creator), Balcer, L. J. (Creator), Bernick, C. (Creator), Au, R. (Creator), Banks, S. J. (Creator), Barr, W. B. (Creator), Bouix, S. (Creator), Cantu, R. C. (Creator), Coleman, M. J. (Creator), Dodick, D. W. (Creator), Farrer, L. A. (Creator), Geda, Y. E. (Creator), Katz, D. I. (Creator), Koerte, I. K. (Creator), Kowall, N. W. (Creator), Lin, A. P. (Creator), Marcus, D. S. (Creator), Marek, K. L. (Creator), McClean, M. D. (Creator), McKee, A. C. (Creator), Mez, J. (Creator), Palmisano, J. N. (Creator), Peskind, E. R. (Creator), Tripodis, Y. (Creator), Turner, R. W. (Creator), Wethe, J. V. (Creator), Cummings, J. L. (Creator), Reiman, E. M. (Creator), Shenton, M. E. (Creator), Stern, R. A. (Creator), Stern, R. A. (Creator), Balcer, L. J. (Creator), Au, R. (Creator), Banks, S. J. (Creator), Barr, W. B. (Creator), Cantu, R. C. (Creator), Dodick, D. W. (Creator), Farrer, L. A. (Creator), Katz, D. I. (Creator), Koerte, I. K. (Creator), Marek, K. L. (Creator), McKee, A. C. (Creator), Peskind, E. R. (Creator), Tripodis, Y. (Creator), Cummings, J. L. (Creator) & Reiman, E. M. (Creator), Figshare, 2021

  DOI: 10.6084/m9.figshare.c.5558784, https://springernature.figshare.com/collections/Developing_methods_to_detect_and_diagnose_chronic_traumatic_encephalopathy_during_life_rationale_design_and_methodology_for_the_DIAGNOSE_CTE_Research_Project/5558784

  Dataset

• Additional file 1 of CapsNet-SSP: multilane capsule network for predicting human saliva-secretory proteins

  Du, W. (Creator), Sun, Y. (Creator), Li, G. (Creator), Cao, H. (Creator), Pang, R. (Creator), Li, Y. (Creator) & Gaoyang, L. (Contributor), figshare Academic Research System, 2020

  DOI: 10.6084/m9.figshare.12456899.v1, https://springernature.figshare.com/articles/dataset/Additional_file_1_of_CapsNet-SSP_multilane_capsule_network_for_predicting_human_saliva-secretory_proteins/12456899/1

  Dataset

• CCDC 851607: Experimental Crystal Structure Determination

  Darwish, N. (Creator), Díez-Pérez, I. (Contributor), Da Silva, P. (Creator), Tao, N. (Creator), Gooding, J. J. (Creator), Paddon-Row, M. N. (Creator) & Da Silva, P. (Creator), The Cambridge Structural Database, 2012

  DOI: 10.5517/ccxl56v, http://www.ccdc.cam.ac.uk/services/structure_request?id=doi:10.5517/ccxl56v&sid=DataCite

  Dataset

• Sperm Proteome Maturation in the Mouse Epididymis

  Skerget, S. (Creator), Rosenow, M. A. (Creator), Petritis, K. (Creator) & Karr, T. L. (Creator), Figshare, 2015

  DOI: 10.6084/m9.figshare.1564752.v1, https://figshare.com/articles/Sperm_Proteome_Maturation_in_the_Mouse_Epididymis/1564752/1

  Dataset

• CCDC 734018: Experimental Crystal Structure Determination

  Pettit, G. R. (Creator), Meng, Y. (Creator), Pettit, R. K. (Creator), Herald, D. L. (Creator), Cichacz, Z. A. (Creator), Doubek, D. L. (Creator), Richert, L. (Creator) & Pettit, G. R. (Creator), The Cambridge Structural Database, 2011

  DOI: 10.5517/ccsmt06, http://www.ccdc.cam.ac.uk/services/structure_request?id=doi:10.5517/ccsmt06&sid=DataCite

  Dataset

• CCDC 772476: Experimental Crystal Structure Determination

  Pettit, G. R. (Creator), Meng, Y. (Creator), Pettit, R. K. (Creator), Herald, D. L. (Creator), Hogan, F. (Creator), Cichacz, Z. A. (Creator) & Pettit, G. R. (Creator), The Cambridge Structural Database, 2011

  DOI: 10.5517/cctxtl3, http://www.ccdc.cam.ac.uk/services/structure_request?id=doi:10.5517/cctxtl3&sid=DataCite

  Dataset

• Additional file 1 of Modulation of gene expression in heart and liver of hibernating black bears (Ursus americanus)

  Stewart, N. C. (Contributor), Goropashnaya, A. V. (Contributor), Tøien, Ø. (Contributor), Barnes, B. M. (Contributor), Showe, M. K. (Contributor), Dorus, S. (Contributor), Showe, L. C. (Contributor), Fedorov, V. B. (Contributor), Karr, T. L. (Contributor), Wang, H. (Contributor), Wilkin, E. C. (Contributor), Yan, J. (Contributor) & Chang, C. (Contributor), figshare Academic Research System, Jan 1 2020

  DOI: 10.6084/m9.figshare.12877090.v1, https://doi.org/10.6084%2Fm9.figshare.12877090.v1

  Dataset

• Additional file 1: of Serp-2, a virus-derived apoptosis and inflammasome inhibitor, attenuates liver ischemia-reperfusion injury in mice

  Yaron, J. (Creator), Chen, H. (Creator), Ambadapadi, S. (Contributor), Zhang, L. (Contributor), Tafoya, A. M. (Creator), Munk, B. H. (Creator), Wakefield, D. N. (Creator), Fuentes, J. (Creator), Marques, B. J. (Creator), Harripersaud, K. (Creator), Bartee, M. Y. (Creator), Davids, J. A. (Creator), Zheng, D. (Contributor), Rand, K. (Creator), Dixon, L. (Creator), Moyer, R. W. (Creator), Clapp, W. L. (Creator) & Lucas, A. R. (Creator), Figshare, 2019

  DOI: 10.6084/m9.figshare.8202668, https://springernature.figshare.com/articles/figure/Additional_file_1_of_Serp-2_a_virus-derived_apoptosis_and_inflammasome_inhibitor_attenuates_liver_ischemia-reperfusion_injury_in_mice/8202668

  Dataset

• Serp-2, a virus-derived apoptosis and inflammasome inhibitor, attenuates liver ischemia-reperfusion injury in mice

  Yaron, J. (Creator), Chen, H. (Creator), Ambadapadi, S. (Contributor), Zhang, L. (Contributor), Tafoya, A. M. (Creator), Munk, B. H. (Creator), Wakefield, D. N. (Creator), Fuentes, J. (Creator), Marques, B. J. (Creator), Harripersaud, K. (Creator), Bartee, M. Y. (Creator), Davids, J. A. (Creator), Zheng, D. (Contributor), Rand, K. (Creator), Dixon, L. (Creator), Moyer, R. W. (Creator), Clapp, W. L. (Creator) & Lucas, A. R. (Creator), Figshare, 2019

  DOI: 10.6084/m9.figshare.c.4522781, https://springernature.figshare.com/collections/Serp-2_a_virus-derived_apoptosis_and_inflammasome_inhibitor_attenuates_liver_ischemia-reperfusion_injury_in_mice/4522781

  Dataset

• Improved Throughput for All-or-Nothing Multicommodity Flows with Arbitrary Demands

  Chaturvedi, A. (Contributor), Chekuri, C. (Contributor), Liu, M. (Contributor), Richa, A. (Contributor), Rost, M. (Contributor), Schmid, S. (Contributor) & Weber, J. (Contributor), Zenodo, Mar 25 2022

  DOI: 10.5281/zenodo.8118453, https://zenodo.org/records/8118453

  Dataset

• CCDC 2177984: Experimental Crystal Structure Determination

  De Bolòs, E. (Contributor), Martínez-Abadía, M. (Contributor), Hernández-Culebras, F. (Contributor), Haymaker, A. (Contributor), Swain, K. (Contributor), Strutyński, K. (Contributor), Weare, B. L. (Contributor), Castells-Gil, J. (Contributor), Padial, N. M. (Contributor), Martí-Gastaldo, C. (Contributor), Khlobystov, A. N. (Contributor), Saeki, A. (Contributor), Melle-Franco, M. (Contributor), Nannenga, B. (Contributor) & Mateo-Alonso, A. (Contributor), Cambridge Crystallographic Data Centre, 2022

  DOI: 10.5517/ccdc.csd.cc2c3ckf, http://www.ccdc.cam.ac.uk/services/structure_request?id=doi:10.5517/ccdc.csd.cc2c3ckf&sid=DataCite

  Dataset

• CCDC 2286467: Experimental Crystal Structure Determination

  Han, X. (Contributor), Neumann, S. E. (Contributor), Nannenga, B. (Contributor), Wang, K. (Contributor), Li, K. K. (Contributor), Mirzaei, S. (Contributor), Yao, X. (Contributor), Zhu, C. (Contributor), Gao, M. (Contributor), Zhang, Y. (Contributor), Cui, Y. (Contributor) & Yaghi, O. M. (Contributor), Cambridge Crystallographic Data Centre, 2023

  DOI: 10.5517/ccdc.csd.cc2gr80j, http://www.ccdc.cam.ac.uk/services/structure_request?id=doi:10.5517/ccdc.csd.cc2gr80j&sid=DataCite

  Dataset

• Zinc Substituted Reaction Center M(L214H) Variant of Rhodobacter sphaeroides

  Saer, R. G. (Contributor), Pan, J. (Contributor), Hardjasa, A. (Contributor), Lin, S. (Contributor), Rosell, F. (Contributor), Mauk, A. G. (Contributor), Woodbury, N. (Contributor), Murphy, M. E. P. (Contributor) & Beatty, J. T. (Contributor), Protein Data Bank (PDB), Jan 22 2014

  DOI: 10.2210/pdb4N7L/pdb, https://www.wwpdb.org/pdb?id=pdb_00004n7l

  Dataset

• MOESM6 of Longitudinal analysis of Plasmodium falciparum genetic variation in Turbo, Colombia: implications for malaria control and elimination

  Chenet, S. M. (Contributor), Taylor, J. (Contributor), Zuluaga, L. (Contributor), Escalante, A. A. (Contributor) & Blair, S. (Contributor), figshare Academic Research System, Sep 22 2015

  DOI: 10.6084/m9.figshare.c.3605909_d4.v1, https://doi.org/10.6084%2Fm9.figshare.c.3605909_d4.v1

  Dataset

• Additional file 2 of Comparison of personal and shared frameshift neoantigen vaccines in a mouse mammary cancer model

  Lainson, J. (Contributor), Diehnelt, C. W. (Contributor), Shen, L. (Contributor), Zhang, J. (Contributor), Johnston, S. (Contributor), Peterson, M. (Contributor) & Murphy, S. N. (Contributor), figshare Academic Research System, May 5 2020

  DOI: 10.6084/m9.figshare.12257840.v1, https://doi.org/10.6084%2Fm9.figshare.12257840.v1

  Dataset

• Additional file 1: Figure S1. of The association of plasma cystatin C proteoforms with diabetic chronic kidney disease

  Yassine, H. N. (Creator), Trenchevska, O. (Creator), Dong, Z. (Contributor), Bashawri, Y. (Creator), Koska, J. (Creator), Reaven, P. D. (Creator), Nelson, R. W. (Creator) & Nedelkov, D. (Creator), figshare Academic Research System, 2016

  DOI: 10.6084/m9.figshare.c.3601550_d1.v1, https://springernature.figshare.com/articles/dataset/Additional_file_1_Figure_S1_of_The_association_of_plasma_cystatin_C_proteoforms_with_diabetic_chronic_kidney_disease/4334081/1

  Dataset

• Longitudinal analysis of Plasmodium falciparum genetic variation in Turbo, Colombia: implications for malaria control and elimination

  Chenet, S. M. (Creator), Taylor, J. (Creator), Blair, S. (Creator), Zuluaga, L. (Creator) & Escalante, A. A. (Contributor), figshare Academic Research System, 2015

  DOI: 10.6084/m9.figshare.c.3605909.v1, https://figshare.com/collections/Longitudinal_analysis_of_Plasmodium_falciparum_genetic_variation_in_Turbo_Colombia_implications_for_malaria_control_and_elimination/3605909/1

  Dataset

• MOESM5 of Longitudinal analysis of Plasmodium falciparum genetic variation in Turbo, Colombia: implications for malaria control and elimination

  Chenet, S. M. (Contributor), Escalante, A. A. (Contributor), Zuluaga, L. (Contributor), Taylor, J. (Contributor) & Blair, S. (Contributor), figshare Academic Research System, Sep 22 2015

  DOI: 10.6084/m9.figshare.c.3605909_d5.v1, https://doi.org/10.6084%2Fm9.figshare.c.3605909_d5.v1

  Dataset

• MOESM3 of Longitudinal analysis of Plasmodium falciparum genetic variation in Turbo, Colombia: implications for malaria control and elimination

  Escalante, A. A. (Contributor), Zuluaga, L. (Contributor), Blair, S. (Contributor), Chenet, S. M. (Contributor) & Taylor, J. (Contributor), figshare Academic Research System, Sep 22 2015

  DOI: 10.6084/m9.figshare.c.3605909_d2.v1, https://doi.org/10.6084%2Fm9.figshare.c.3605909_d2.v1

  Dataset

• CCDC 1938018: Experimental Crystal Structure Determination

  Serhan, M. (Contributor), Jackemeyer, D. (Contributor), Gomez, I. J. (Contributor), Sprowls, M. (Contributor), Cacioppo, M. (Contributor), Peng, Y. (Contributor), Forzani, E. (Contributor), Arcudi, F. (Contributor), Tao, N. (Contributor), Perez, I. D. (Contributor), Prato, M. (Contributor), Maret, W. (Contributor), Arnaiz, B. (Contributor), Zeng, X. (Contributor), Long, M. (Contributor), Sun, J. (Contributor), Li, J. (Contributor) & Ji, C. (Contributor), The Cambridge Structural Database, Jan 1 2018

  DOI: 10.5517/ccdc.csd.cc231nqk, https://doi.org/10.5517%2Fccdc.csd.cc231nqk

  Dataset