Additional file 1 of Mitogenomic phylogeny of Callithrix with special focus on human transferred taxa

Additional file 1: Table S1. Metadata for newly collected samples as well as primate mitogenome sequences obtained from GenBank. The ‘Sample’ column gives ID of each new sampled individual or the species for sequences obtained from previous studies. The ‘Accession’ column gives GenBank accession numbers for each sequence, the ‘Assembly Method This Study’ column states the manner in which new Callithrix mitogenomes were sequenced and assembled (S=Sanger; N=NOVOPlasty2.6.4). The ‘Phenotype’ column indicates whether the sampled individual possessed a pure species or hybrid phenotype, and capital letters in parentheses next to C. penicillata x C. geoffroyi category are specific phenotype classifications following Figure 5 in Fuzessy et al. (2014). The ‘mtDNA Genome Lineage’ column indicates phylogenetic classification of the mitogenome of the sampled individual. The ‘Sampling Location’ column indicates where each individual was sampled. Nearest cities are located for individuals sampled from the wild, and facilities are indicated for individuals sampled in captivity. The Guarulhos Municipal Zoo is located in Guarulhos, São Paulo, Brazil; CRC (Callitrichid Research Center) is located in Omaha, Nebraska, US; NEPRC (New England Primate Research Center, no longer in operation) was located in Southborough, Massachusetts, US; CPRJ (Centro de Primatologia do Rio de Janeiro) is located in Guapimirim, Rio de Janeiro, Brazil; CEMAFAUNA (Centro de Conservação e Manejo de Fauna da Caatinga) is located in Petrolina, Pernambuco. Abbreviations for Brazilian states in the ‘Sampling Location’ column are as follows: Espírito Santo (ES), Minas Gerais (MG), Rio de Janeiro (RJ), São Paulo (SP). DF is the Brazilian Federal District. (NA=No data Available). Table S2. Each cell lists individuals that possess the same mtDNA haplotypes. Table S3. Organization of the C. aurita mitogenome based on 16,471 sequenced bases of individual BJT065 (Accession number MT041703). Table S4. Divergence times for Callithrix species and select nodes (MRCA = Most recent common ancestor; values in brackets = 95% highest posterior density). Node names follow major node designations shown in Figure S3 as capital letters. Table S5. BMM posterior probabilities for Fig. 4 nodes. Location abbreviations follow Fig. 4. Table S6. Summary of record numbers for collected samples that have been entered into the Brazilian CGEN SISGEN sample database (ES=Espírito Santo, MG=Minas Gerais, PE= Pernambuco, RJ=Rio de Janeiro, SP=São Paulo).