TY - JOUR
T1 - Surveillance of rhinovirus diversity among a university community identifies multiple types from all three species including an unassigned rhinovirus A genotype
AU - Faleye, Temitope O.C.
AU - Elyaderani, Amir
AU - Skidmore, Peter
AU - Adhikari, Sangeet
AU - Smith, Abriana
AU - Kaiser, Nicole
AU - Sandrolini, Helen
AU - Finnerty, Sarah
AU - Halden, Rolf U.
AU - Varsani, Arvind
AU - Scotch, Matthew
N1 - Funding Information:
The research reported in this publication was supported by the U.S. National Library of Medicine of the National Institutes of Health under award number U01LM013129 to RUH, MS, and AV. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health. The authors thank the Genomics Core at Biodesign Institute, Arizona State University for help with library preparation, Illumina and Sanger sequencing.
Funding Information:
The research reported in this publication was supported by the U.S. National Library of Medicine of the National Institutes of Health under award number U01LM013129 to RUH, MS, and AV. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health. The authors thank the Genomics Core at Biodesign Institute, Arizona State University for help with library preparation, Illumina and Sanger sequencing.
Publisher Copyright:
© 2022 The Authors. Influenza and Other Respiratory Viruses published by John Wiley & Sons Ltd.
PY - 2023/1
Y1 - 2023/1
N2 - We determine the presence and diversity of rhinoviruses in nasopharyngeal swab samples from 248 individuals who presented with influenza-like illness (ILI) at a university clinic in the Southwest United States between October 1, 2020 and March 31, 2021. We identify at least 13 rhinovirus genotypes (A11, A22, A23, A25, A67, A101, B6, B79, C1, C17, C36, and C56, as well a new genotype [AZ88**]) and 16 variants that contributed to the burden of ILI in the community. We also describe the complete capsid protein gene of a member (AZ88**) of an unassigned rhinovirus A genotype.
AB - We determine the presence and diversity of rhinoviruses in nasopharyngeal swab samples from 248 individuals who presented with influenza-like illness (ILI) at a university clinic in the Southwest United States between October 1, 2020 and March 31, 2021. We identify at least 13 rhinovirus genotypes (A11, A22, A23, A25, A67, A101, B6, B79, C1, C17, C36, and C56, as well a new genotype [AZ88**]) and 16 variants that contributed to the burden of ILI in the community. We also describe the complete capsid protein gene of a member (AZ88**) of an unassigned rhinovirus A genotype.
KW - Southwestern United States
KW - high-throughput nucleotide sequencing
KW - population surveillance
KW - rhinovirus
KW - student health services
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U2 - 10.1111/irv.13057
DO - 10.1111/irv.13057
M3 - Article
C2 - 36168937
AN - SCOPUS:85138721847
SN - 1750-2640
VL - 17
JO - Influenza and other Respiratory Viruses
JF - Influenza and other Respiratory Viruses
IS - 1
M1 - e13057
ER -