Qiyun Zhu

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1 Similar Profiles

89 Article
10 Comment/debate
4 Letter
2 Chapter
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- 2 Review article
- 1 Editorial

Genetic diversity of Apis mellifera filamentous virus in bees sampled in the USA and Jamaica
Bandoo, R. A., Kraberger, S., Ozturk, C., Zhu, Q., Smith, B., Krupovic, M., Cook, C. & Varsani, A., Apr 2026, In: Archives of virology. 171, 4, 125.
Research output: Contribution to journal › Article › peer-review
Scikit-bio: a fundamental Python library for biological omic data analysis
Aton, M., McDonald, D., Cañardo Alastuey, J., Azom, R., Batra, P., Bezshapkin, V., Bolyen, E., Cagle, A., Caporaso, J. G., Debelius, J. W., Gorlick, K., Hamsanipally, N., Hunger, L., Keluskar, A., Liao, D., Lu, Y. Y., Navas-Molina, J. A., Pitman, A., Rideout, J. R. & Sazonov, A. & 12 others, Sathappan, B., Schwarzberg Lipson, K., Sfiligoi, I., Tapo, C., Vázquez-Baeza, Y., Wu, Z., Xu, Z. Z., Ye, M. S., Zhao, J., Knight, R., Morton, J. T. & Zhu, Q., Feb 2026, In: Nature Methods. 23, 2, p. 274-276 3 p.
Research output: Contribution to journal › Letter › peer-review

3 Link opens in a new tab Scopus citations
Associations between relative abundances of Bifidobacterium species in the gut and DNA methylation of cortisol-related genes in a pediatric population
Harker, S. A., Bonham, K. S., McCann, S. H., Volpe, A. R., Zhu, Q., D’Sa, V., Koinis-Mitchell, D., Deoni, S. C. L., Klepac-Ceraj, V. & Lewis, C. R., 2025, In: Frontiers in Microbiology. 16, 1558809.
Research output: Contribution to journal › Article › peer-review

Open Access
1 Link opens in a new tab Scopus citations
Augmenting microbial phylogenomic signal with tailored marker gene sets
Secaira-Morocho, H., Jiang, X. & Zhu, Q., Dec 2025, In: Nature communications. 16, 1, 9943.
Research output: Contribution to journal › Article › peer-review

Open Access
CaDAVEr: a metagenome-assembled genome catalog of microbial decomposers across vertebrate environments
Seitz, V. A., McGivern, B. B., Shaffer, M., Borton, M. A., Belk, A. D., Ghadermazi, P., Martino, C., Shenhav, L., Zhang, A. R., Shi, P., Emmons, A., Deel, H., Xu, Z. Z., Nieciecki, V., Zhu, Q., Cantrell, K., Ben-Hur, A., Reed, S. C., Humphry, G. C. & Ackermann, G. & 15 others, McDonald, D., Chan, S. H. J., Connor, M., Boyd, D. A., Smith, J., Watson, J. M. S., Vidoli, G., Steadman, D., Lynne, A. M., Bucheli, S., Carter, D. O., Burcham, Z. M., Knight, R., Wrighton, K. C. & Metcalf, J. L., Nov 2025, In: Microbiology Resource Announcements. 14, 11
Research output: Contribution to journal › Article › peer-review

Open Access

1 Finished
1 Active

Enhancing infectious disease detection in Arizona: novel computational approaches to pathogen identification in microbiome data
Zhu, Q. (PI)
Arizona Department of Health Services
4/8/24 → 4/7/27
Project: Research project
Expanding Python library scikit-bio for efficient multi-omic data integration and complex community modeling
Zhu, Q. (PI)
US Department of Energy (DOE)
9/1/23 → 8/31/24
Project: Research project

Additional file 1 of Location-specific signatures of Crohn’s disease at a multi-omics scale
Gonzalez, C. G. (Creator), Mills, R. H. (Creator), Zhu, Q. (Creator), Sauceda, C. (Creator), Knight, R. (Creator), Dulai, P. S. (Creator) & Gonzalez, D. J. (Creator), Figshare, 2022
DOI: 10.6084/m9.figshare.20581022.v1, https://springernature.figshare.com/articles/figure/Additional_file_1_of_Location-specific_signatures_of_Crohn_s_disease_at_a_multi-omics_scale/20581022/1
Dataset
Additional file 10 of Location-specific signatures of Crohn’s disease at a multi-omics scale
Gonzalez, C. G. (Creator), Mills, R. H. (Creator), Zhu, Q. (Creator), Sauceda, C. (Creator), Knight, R. (Creator), Dulai, P. S. (Creator) & Gonzalez, D. J. (Creator), Figshare, 2022
DOI: 10.6084/m9.figshare.20581019.v1, https://springernature.figshare.com/articles/dataset/Additional_file_10_of_Location-specific_signatures_of_Crohn_s_disease_at_a_multi-omics_scale/20581019/1
Dataset
Additional file 1 of Location-specific signatures of Crohn’s disease at a multi-omics scale
Gonzalez, C. G. (Creator), Mills, R. H. (Creator), Zhu, Q. (Creator), Sauceda, C. (Creator), Knight, R. (Creator), Dulai, P. S. (Creator) & Gonzalez, D. J. (Creator), Figshare, 2022
DOI: 10.6084/m9.figshare.20581022, https://springernature.figshare.com/articles/figure/Additional_file_1_of_Location-specific_signatures_of_Crohn_s_disease_at_a_multi-omics_scale/20581022
Dataset
Location-specific signatures of Crohn’s disease at a multi-omics scale
Gonzalez, C. G. (Creator), Mills, R. H. (Creator), Zhu, Q. (Creator), Sauceda, C. (Creator), Knight, R. (Creator), Dulai, P. S. (Creator) & Gonzalez, D. J. (Creator), Figshare, 2022
DOI: 10.6084/m9.figshare.c.6163022.v1, https://springernature.figshare.com/collections/Location-specific_signatures_of_Crohn_s_disease_at_a_multi-omics_scale/6163022/1
Dataset
Fast and accurate distance‐based phylogenetic placement using divide and conquer
Balaban, M. (Contributor), Jiang, Y. (Contributor), Roush, D. (Contributor), Zhu, Q. (Contributor) & Mirarab, S. (Contributor), Zenodo, Jul 6 2023
DOI: 10.6076/D1M59N, https://zenodo.org/records/8121386
Dataset

Qiyun Zhu

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Collaborations and top research areas from the last five years

Dive into details

Genetic diversity of Apis mellifera filamentous virus in bees sampled in the USA and Jamaica

Scikit-bio: a fundamental Python library for biological omic data analysis

Associations between relative abundances of Bifidobacterium species in the gut and DNA methylation of cortisol-related genes in a pediatric population

Augmenting microbial phylogenomic signal with tailored marker gene sets

CaDAVEr: a metagenome-assembled genome catalog of microbial decomposers across vertebrate environments

Enhancing infectious disease detection in Arizona: novel computational approaches to pathogen identification in microbiome data

Expanding Python library scikit-bio for efficient multi-omic data integration and complex community modeling

Additional file 1 of Location-specific signatures of Crohn’s disease at a multi-omics scale

Additional file 10 of Location-specific signatures of Crohn’s disease at a multi-omics scale

Additional file 1 of Location-specific signatures of Crohn’s disease at a multi-omics scale

Location-specific signatures of Crohn’s disease at a multi-omics scale

Fast and accurate distance‐based phylogenetic placement using divide and conquer

Qiyun Zhu

Fingerprint

Collaborations and top research areas from the last five years

Research output

Projects

Datasets