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Collaborations and top research areas from the last five years
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Automating Blueprints for the Assembly of Colloidal Quasicrystal Clusters
Pinto, D. E. P., Sulc, P., Sciortino, F. & Russo, J., Jan 14 2025, In: ACS nano. 19, 1, p. 512-519 8 p.Research output: Contribution to journal › Article › peer-review
7 Link opens in a new tab Scopus citations -
Controlling DNA–RNA strand displacement kinetics with base distribution
Ratajczyk, E. J., Bath, J., Šulc, P., Doye, J. P. K., Louis, A. A. & Turberfield, A. J., Jun 10 2025, In: Proceedings of the National Academy of Sciences of the United States of America. 122, 23, e2416988122.Research output: Contribution to journal › Article › peer-review
Open Access7 Link opens in a new tab Scopus citations -
DNA-Templated Spatially Controlled Proteolysis Targeting Chimera for Cyclin D1–CDK4/6 Complex Protein Degradation
Zheng, R., Prasad, A., Satyabola, D., Xu, Y., Roy, S., Yan, Y., Šulc, P. & Yan, H., Aug 20 2025, In: Journal of the American Chemical Society. 147, 33, p. 29742-29755 14 p.Research output: Contribution to journal › Article › peer-review
Open Access2 Link opens in a new tab Scopus citations -
Falsifiability Test for Classical Nucleation Theory
Beneduce, C., Pinto, D. E. P., Rovigatti, L., Romano, F., Šulc, P., Sciortino, F. & Russo, J., Apr 11 2025, In: Physical Review Letters. 134, 14, 148201.Research output: Contribution to journal › Article › peer-review
Open Access4 Link opens in a new tab Scopus citations -
High-speed 3D DNA PAINT and unsupervised clustering for unlocking 3D DNA origami cryptography
Wisna, G. B. M., Sukhareva, D., Zhao, J., Chopade, P., Satyabola, D., Matthies, M., Roy, S., Wang, C., Šulc, P., Yan, H. & Hariadi, R. F., Dec 2025, In: Nature communications. 16, 1, 11514.Research output: Contribution to journal › Article › peer-review
Open Access1 Link opens in a new tab Scopus citations
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NSF POSE: Phase II: Open-source ecosystem for nucleic acid nanotechnology modeling
Stephanopoulos, N. (CoI) & Sulc, P. (PI)
National Science Foundation (NSF)
8/1/24 → 7/31/26
Project: Research project
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Multivalent protein-DNA nanostructures as synthetic blocking antibodies - Resubmission - 1
Stabenfeldt, S. (CoI), Stephanopoulos, N. (PI) & Sulc, P. (CoI)
HHS: National Institutes of Health (NIH)
7/1/23 → 6/30/26
Project: Research project
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CAREER: Design and modeling for modular bionanotechnology and citizen science
Sulc, P. (PI)
National Science Foundation (NSF)
2/1/23 → 1/31/28
Project: Research project
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Collaborative Research: FET: Medium: Engineering DNA and RNA computation through simulation, sequence design, and experimental verification
Sulc, P. (PI)
National Science Foundation (NSF)
7/1/22 → 6/30/26
Project: Research project
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SemiSynBio-III: DNA Templated Chiral Metamaterials for Information Storage
Sulc, P. (CoI), Yang, S. (CoI), Yan, H. (PI) & Hariadi, R. F. (CoI)
National Science Foundation (NSF)
11/1/22 → 10/31/25
Project: Research project
Datasets
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Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J31 immobile Holliday junction
Simmons, C. R. (Contributor), MacCulloch, T. (Contributor), Krepl, M. (Contributor), Matthies, M. (Contributor), Buchberger, A. (Contributor), Crawford, I. (Contributor), Šponer, J. (Contributor), Šulc, P. (Contributor), Stephanopoulos, N. (Contributor) & Yan, H. (Contributor), Protein Data Bank (PDB), Jul 14 2021
DOI: 10.2210/pdb6WRC/pdb, https://www.wwpdb.org/pdb?id=pdb_00006wrc
Dataset
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Self-assembly of a 3D DNA crystal lattice (4x6 duplex version) containing the J33 immobile Holliday junction
Simmons, C. R. (Contributor), MacCulloch, T. (Contributor), Krepl, M. (Contributor), Matthies, M. (Contributor), Buchberger, A. (Contributor), Crawford, I. (Contributor), Šponer, J. (Contributor), Šulc, P. (Contributor), Stephanopoulos, N. (Contributor) & Yan, H. (Contributor), Protein Data Bank (PDB), Jul 14 2021
DOI: 10.2210/pdb7JOG/pdb, https://www.wwpdb.org/pdb?id=pdb_00007jog
Dataset
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Self-assembly of a 3D DNA crystal lattice (4x6 scramble duplex version) containing the J14 immobile Holliday junction with R3 symmetry
Simmons, C. R. (Contributor), MacCulloch, T. (Contributor), Krepl, M. (Contributor), Matthies, M. (Contributor), Buchberger, A. (Contributor), Crawford, I. (Contributor), Šponer, J. (Contributor), Šulc, P. (Contributor), Stephanopoulos, N. (Contributor) & Yan, H. (Contributor), Protein Data Bank (PDB), Jul 14 2021
DOI: 10.2210/pdb7JL9/pdb, https://www.wwpdb.org/pdb?id=pdb_00007jl9
Dataset
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Self-assembly of a 3D DNA crystal lattice (4x6 scramble duplex version) containing the J3 immobile Holliday junction with R3 symmetry
Simmons, C. R. (Contributor), MacCulloch, T. (Contributor), Krepl, M. (Contributor), Matthies, M. (Contributor), Buchberger, A. (Contributor), Crawford, I. (Contributor), Šponer, J. (Contributor), Šulc, P. (Contributor), Stephanopoulos, N. (Contributor) & Yan, H. (Contributor), Protein Data Bank (PDB), Jul 14 2021
DOI: 10.2210/pdb7JKG/pdb, https://www.wwpdb.org/pdb?id=pdb_00007jkg
Dataset
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Self-assembly of a 3D DNA crystal lattice (4x6 scramble junction version) containing the J2 immobile Holliday junction
Simmons, C. R. (Contributor), MacCulloch, T. (Contributor), Krepl, M. (Contributor), Matthies, M. (Contributor), Buchberger, A. (Contributor), Crawford, I. (Contributor), Šponer, J. (Contributor), Šulc, P. (Contributor), Stephanopoulos, N. (Contributor) & Yan, H. (Contributor), Protein Data Bank (PDB), Jul 14 2021
DOI: 10.2210/pdb7JJZ/pdb, https://www.wwpdb.org/pdb?id=pdb_00007jjz
Dataset