Research output per year
Research output per year
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Dive into the research topics where Oliver Beckstein is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
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Collaborations and top research areas from the last five years
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Bayesian Nonparametric Analysis of Residence Times for Protein-Lipid Interactions in Molecular Dynamics Simulations
Sexton, R., Fazel, M., Schweiger, M., Pressé, S. & Beckstein, O., Apr 22 2025, In: Journal of Chemical Theory and Computation. 21, 8, p. 4203-4220 18 p.Research output: Contribution to journal › Article › peer-review
2 Scopus citations -
Chloride binding does not influence prestin motor speed at very high frequencies in the mouse outer hair cell
Bai, J. P., Zhang, C., Bahader, I., Strenzke, N., Renigunta, V., Oliver, D., Navaratnam, D., Beckstein, O. & Santos-Sacchi, J., Aug 7 2025, In: Structure. 33, 8, p. 1417-1424.e3Research output: Contribution to journal › Article › peer-review
Open Access -
Erratum: Chloride binding does not influence prestin motor speed at very high frequencies in the mouse outer hair cell (Structure (2025) 33(8) (1417–1424.e3), (S0969212625001753), (10.1016/j.str.2025.04.019))
Bai, J. P., Zhang, C., Bahader, I., Strenzke, N., Renigunta, V., Oliver, D., Navaratnam, D., Beckstein, O. & Santos-Sacchi, J., Oct 2 2025, In: Structure. 33, 10, p. 1805-1811 7 p.Research output: Contribution to journal › Comment/debate › peer-review
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Kinetic Diagram Analysis: A Python Library for Calculating Steady-State Observables of Biochemical Systems Analytically
Awtrey, N. C. & Beckstein, O., Sep 10 2024, In: Journal of Chemical Theory and Computation. 20, 17, p. 7646-7666 21 p.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Author Correction: Structure, mechanism and lipid-mediated remodeling of the mammalian Na+/H+ exchanger NHA2 (Nature Structural & Molecular Biology, (2022), 29, 2, (108-120), 10.1038/s41594-022-00738-2)
Matsuoka, R., Fudim, R., Jung, S., Zhang, C., Bazzone, A., Chatzikyriakidou, Y., Robinson, C. V., Nomura, N., Iwata, S., Landreh, M., Orellana, L., Beckstein, O. & Drew, D., Apr 2023, In: Nature Structural and Molecular Biology. 30, 4, p. 565 1 p.Research output: Contribution to journal › Comment/debate › peer-review
Open Access1 Scopus citations
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Elements: Streaming Molecular Dynamics Simulation Trajectories for Direct Analysis: Applications to Sub-Picosecond Dynamics in Microsecond Simulations
Beckstein, O. (CoI) & Heyden, M. (PI)
National Science Foundation (NSF)
8/1/23 → 7/31/26
Project: Research project
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Membrane properties of the OHC system
Beckstein, O. (PI)
HHS: National Institutes of Health (NIH)
6/1/22 → 5/31/27
Project: Research project
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POSE: Phase II: Building open source ecosystems in molecular sciences through collaboration and technology
Beckstein, O. (PI)
National Science Foundation (NSF)
10/1/23 → 9/30/25
Project: Research project
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MDAnalysis: Faster, extensible molecular analysis for reproducible science
Beckstein, O. (PI)
1/15/22 → 11/30/24
Project: Research project
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CC Compute The Arizona Federated Open Research Computing Enclave AFORCE an Advanced Computing Platform for Science Engineering and Health
Sulc, P. (CoI), Herrmann, M. (CoI), Sankar, L. (CoI), Oswald, J. (CoI), Muhich, C. (CoI), Jennewein, D. (PI), Pfeifer, S. (CoI), Yang, Y. (CoI), Line, M. (CoI), Liang, J. (CoI), Ren, Y. (CoI), Singharoy, A. (CoI), Heyden, M. (CoI), Liu, Y. (CoI), Zheng, W. (CoI), Beckstein, O. (CoI), Jayasuriya, S. (CoI), Wang, Y. (CoI), Singh, A. (CoI), Ozkan, B. (CoI) & Jiao, Y. (CoI)
National Science Foundation (NSF)
10/1/21 → 9/30/24
Project: Research project
Datasets
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alchemistry/alchemlyb: 0.3.0
Beckstein, O. (Contributor), Zenodo, Aug 6 2019
DOI: 10.5281/zenodo.3361016, https://zenodo.org/record/3361016
Dataset
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2X79 : Inward facing conformation of Mhp1
Henderson, P. J. F. (Contributor), Beckstein, O. (Contributor), Sharples, D. (Contributor), Shimamura, T. (Contributor), Weyand, S. (Contributor), Rutherford, N. G. (Contributor), Hadden, J. M. (Contributor), Sharpies, D. (Contributor), Sansom, M. S. P. (Contributor), Iwata, S. (Contributor) & Cameron, A. D. (Contributor), RCSB-PDB, 2010
DOI: 10.2210/pdb2x79/pdb, https://www.rcsb.org/structure/2X79
Dataset
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Crystal structure of the Na+/H+ antiporter NhaA at pH 6.5
Winkelmann, I. (Contributor), Uzdavinys, P. (Contributor), Kenney, I. M. (Contributor), Brock, J. (Contributor), Meier, P. F. (Contributor), Wagner, L.-M. (Contributor), Gabriel, F. (Contributor), Jung, S. (Contributor), Matsuoka, R. (Contributor), von Ballmoos, C. (Contributor), Beckstein, O. (Contributor) & Drew, D. (Contributor), Protein Data Bank (PDB), Aug 10 2022
DOI: 10.2210/pdb7S24/pdb, https://www.wwpdb.org/pdb?id=pdb_00007s24
Dataset
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Cryo-EM structure of YiiP-Fab complex in Holo state
Lopez-Redondo, M. (Contributor), Fan, S. (Contributor), Koide, A. (Contributor), Koide, S. (Contributor), Beckstein, O. (Contributor) & Stokes, D. L. (Contributor), Protein Data Bank (PDB), Jan 6 2021
DOI: 10.2210/pdb7KZZ/pdb, https://www.wwpdb.org/pdb?id=pdb_00007kzz
Dataset
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Cryo EM structure of bison NHA2 in detergent structure
Matsuoka, R. (Contributor), Fudim, R. (Contributor), Jung, S. (Contributor), Zhang, C. (Contributor), Bazzone, A. (Contributor), Chatzikyriakidou, Y. (Contributor), Robinson, C. V. (Contributor), Nomura, N. (Contributor), Iwata, S. (Contributor), Landreh, M. (Contributor), Orellana, L. (Contributor), Beckstein, O. (Contributor) & Drew, D. (Contributor), Protein Data Bank (PDB), Jan 26 2022
DOI: 10.2210/pdb7P1J/pdb, https://www.wwpdb.org/pdb?id=pdb_00007p1j
Dataset