Research output per year
Research output per year
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Dive into the research topics where Douglas Shepherd is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
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Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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Approaching maximum resolution in structured illumination microscopy via accurate noise modeling
Saurabh, A., Brown, P. T., Bryan IV, J. S., Fox, Z. R., Kruithoff, R., Thompson, C., Kural, C., Shepherd, D. P. & Pressé, S., Dec 2025, In: NPJ Imaging. 3, 1, 5.Research output: Contribution to journal › Article › peer-review
Open Access4 Scopus citations -
Fourier synthesis optical diffraction tomography for kilohertz rate volumetric imaging
Brown, P. T., Jabbarzadeh, N., Meneses, L., Swanson, K., Pintuff, A., Monakhova, E., Kruithoff, R., Wadhwa, N., Galati, D. F. & Shepherd, D. P., Aug 15 2025, In: Science Advances. 11, 33, eadr8004.Research output: Contribution to journal › Article › peer-review
Open Access3 Scopus citations -
Fully automated multicolour structured illumination module for super-resolution microscopy with two excitation colours
Wang, H., Brown, P. T., Ullom, J., Shepherd, D. P., Heintzmann, R. & Diederich, B., Dec 2025, In: Communications Engineering. 4, 1, 42.Research output: Contribution to journal › Article › peer-review
Open Access -
Mamba time series forecasting with uncertainty quantification
Pessoa, P., Campitelli, P., Shepherd, D. P., Ozkan, S. B. & Pressé, S., Sep 30 2025, In: Machine Learning: Science and Technology. 6, 3, 035012.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Model based optimization for refractive index mismatched light sheet imaging
Sheppard, S. J., Brown, P. T. & Shepherd, D. P., Oct 7 2024, In: Optics Express. 32, 21, p. 36563-36576 14 p.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations
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Tuning and Assessing Bacterial Predation Efficiency in Complex Environments
Presse, S. (PI) & Shepherd, D. (CoI)
National Science Foundation (NSF)
6/1/23 → 5/31/27
Project: Research project
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An interactive and scalable spot detection plugin
Shepherd, D. (PI)
11/1/22 → 7/31/24
Project: Research project
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Human Lung Cell Atlas - Revision - 2
Shepherd, D. (PI)
Chan Zuckerberg Initiative (CZI)
7/1/22 → 6/30/23
Project: Research project
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Scalable 3D molecular imaging and data analysis for cell census generation
Presse, S. (CoI) & Shepherd, D. (PI)
HHS: National Institutes of Health (NIH)
9/15/21 → 9/14/24
Project: Research project
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4-D molecular tracking using kilohertz framerate multi-modal microscopy
Shepherd, D. (PI)
Research Corporation for Science Advancement
8/1/21 → 7/31/23
Project: Research project
Datasets
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Additional file 2 of Transcriptional profiling reveals potential involvement of microvillous TRPM5-expressing cells in viral infection of the olfactory epithelium
Bubak, A. N. (Contributor), Polese, A. G. (Contributor), Hassell, J. (Contributor), Shepherd, D. (Contributor), Ramakrishnan, V. R. (Contributor), Baxter, B. D. (Contributor), Larson, E. D. (Contributor), Nagel, M. A. (Contributor), Merle, L. (Contributor), Restrepo, D. (Contributor), Feinstein, P. (Contributor) & Niemeyer, C. S. (Contributor), figshare Academic Research System, Jan 1 2021
DOI: 10.6084/m9.figshare.14337481.v1, https://doi.org/10.6084%2Fm9.figshare.14337481.v1
Dataset
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Additional file 1 of Transcriptional profiling reveals potential involvement of microvillous TRPM5-expressing cells in viral infection of the olfactory epithelium
Larson, E. D. (Contributor), Merle, L. (Contributor), Polese, A. G. (Contributor), Nagel, M. A. (Contributor), Restrepo, D. (Contributor), Baxter, B. D. (Contributor), Ramakrishnan, V. R. (Contributor), Hassell, J. (Contributor), Bubak, A. N. (Contributor), Niemeyer, C. S. (Contributor), Shepherd, D. (Contributor) & Feinstein, P. (Contributor), figshare Academic Research System, Jan 1 2021
DOI: 10.6084/m9.figshare.14337478.v1, https://doi.org/10.6084%2Fm9.figshare.14337478.v1
Dataset
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Miniature Structured Illumination Microscope for in vivo 3D Imaging of Brain Structures with Optical Sectioning
Supekar, O. D. (Creator), Sias, A. (Creator), Hansen, S. R. (Creator), Martinez, G. (Creator), Peet, G. C. (Creator), Peng, X. (Creator), Bright, V. M. (Creator), Hughes, E. G. (Creator), Restrepo, D. (Creator) & Shepherd, D. P. (Creator), Optica Publishing Group, 2022
DOI: 10.6084/m9.figshare.c.5721200.v1, https://opticapublishing.figshare.com/collections/Miniature_Structured_Illumination_Microscope_for_in_vivo_3D_Imaging_of_Brain_Structures_with_Optical_Sectioning/5721200/1
Dataset
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Miniature Structured Illumination Microscope for in vivo 3D Imaging of Brain Structures with Optical Sectioning
Supekar, O. D. (Creator), Sias, A. (Creator), Hansen, S. R. (Creator), Martinez, G. (Creator), Peet, G. C. (Creator), Peng, X. (Creator), Bright, V. M. (Creator), Hughes, E. G. (Creator), Restrepo, D. (Creator) & Shepherd, D. P. (Creator), Optica Publishing Group, 2022
DOI: 10.6084/m9.figshare.c.5721200, https://opticapublishing.figshare.com/collections/Miniature_Structured_Illumination_Microscope_for_in_vivo_3D_Imaging_of_Brain_Structures_with_Optical_Sectioning/5721200
Dataset
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Ensemble and single cell data for primary Ovis Aries pulmonary artery endothelial cells response to IGF-1 administration
Kim, C. (Contributor), Seedorf, G. J. (Contributor), Abman, S. H. (Contributor) & Shepherd, D. P. (Contributor), Zenodo, Jun 13 2019
DOI: 10.5281/zenodo.2803235, https://zenodo.org/record/2803235
Dataset