Research output per year
Research output per year
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Dive into the research topics where Abhishek Singharoy is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
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Collaborations and top research areas from the last five years
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Finding the E-channel proton loading sites by calculating the ensemble of protonation microstates
Uddin, M. R., Khaniya, U., Gupta, C., Mao, J., Ranepura, G. A., Wei, R. J., Ortiz-Soto, J., Singharoy, A. & Gunner, M. R., Jan 1 2025, In: Biochimica et Biophysica Acta - Bioenergetics. 1866, 1, 149518.Research output: Contribution to journal › Article › peer-review
Open Access -
Molecular dynamics model of mechanophore sensors for biological force measurement
Mittal, S., Wang, R. E., Ros, R., Ondrus, A. E. & Singharoy, A., Jan 15 2025, In: Heliyon. 11, 1, e41178.Research output: Contribution to journal › Article › peer-review
Open Access -
Adaptive Artificial Intelligence to Teach Interactive Molecular Dynamics in the Context of Human-Computer Interaction
Demir, M., Leahy, S. M., Mishra, P., Chen, C. K. & Singharoy, A., 2024, In: EPiC Series in Computing. 102, p. 140-153 14 p.Research output: Contribution to journal › Conference article › peer-review
Open Access -
Organization of a functional glycolytic metabolon on mitochondria for metabolic efficiency
Wang, H., Vant, J. W., Zhang, A., Sanchez, R. G., Wu, Y., Micou, M. L., Luczak, V., Whiddon, Z., Carlson, N. M., Yu, S. B., Jabbo, M., Yoon, S., Abushawish, A. A., Ghassemian, M., Masubuchi, T., Gan, Q., Watanabe, S., Griffis, E. R., Hammarlund, M. & Singharoy, A. & 1 others, , Sep 2024, In: Nature Metabolism. 6, 9, p. 1712-1735 24 p.Research output: Contribution to journal › Article › peer-review
3 Scopus citations -
Outcomes of the EMDataResource cryo-EM Ligand Modeling Challenge
Lawson, C. L., Kryshtafovych, A., Pintilie, G. D., Burley, S. K., Černý, J., Chen, V. B., Emsley, P., Gobbi, A., Joachimiak, A., Noreng, S., Prisant, M. G., Read, R. J., Richardson, J. S., Rohou, A. L., Schneider, B., Sellers, B. D., Shao, C., Sourial, E., Williams, C. I. & Williams, C. J. & 61 others, , Jul 2024, In: Nature Methods. 21, 7, p. 1340-1348 9 p.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations
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Understanding human TRPV1 polymodal activation
Van Horn, W. (PI) & Singharoy, A. (CoI)
HHS: National Institutes of Health (NIH)
6/15/22 → 4/30/27
Project: Research project
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Optimizing photosystem performance through a bioengineered red sites library
Mazor, Y. (PI) & Singharoy, A. (CoI)
4/15/22 → 4/14/25
Project: Research project
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A zero-cost online biotechnology program for middle and high schools
Vermaas, W. (CoI), Hariadi, R. F. (CoI), Lapinaite, A. (CoI), Singharoy, A. (PI), Anderson, K. (CoI), Mishra, P. (CoI) & Hayes, M. (CoI)
US Department of Defense (DOD)
9/15/21 → 9/14/25
Project: Research project
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Dynamics of membrane proteins unraveled by time-resolved serial crystallography
Singharoy, A. (CoI), Weierstall, U. (CoI), Ros, A. (CoI), Chiu, P.-L. (CoI), Fromme, P. (PI) & Kirian, R. (CoI)
HHS: National Institutes of Health (NIH)
3/1/20 → 1/31/25
Project: Research project
Datasets
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2019 EMDataResource Model Metrics Challenge Dataset
Lawson, C. L. (Contributor), Kryshtafovych, A. (Contributor), Adams, P. D. (Contributor), Afonine, P. V. (Contributor), Baker, M. L. (Contributor), Barad, B. A. (Contributor), Bond, P. (Contributor), Burnley, T. (Contributor), Cao, R. (Contributor), Cheng, J. (Contributor), Chojnowski, G. (Contributor), Cowtan, K. (Contributor), Dill, K. A. (Contributor), DiMaio, F. (Contributor), Farrell, D. P. (Contributor), Fraser, J. S. (Contributor), Herzik, M. A. (Contributor), Hoh, S. W. (Contributor), Hou, J. (Contributor), Hung, L.-W. (Contributor), Igaev, M. (Contributor), Joseph, A. P. (Contributor), Kihara, D. (Contributor), Kumar, D. (Contributor), Mittal, S. (Contributor), Monastyrskyy, B. (Contributor), Olek, M. (Contributor), Palmer, C. M. (Contributor), Patwardhan, A. (Contributor), Perez, A. (Contributor), Pfab, J. (Contributor), Richardson, J. S. (Contributor), Sarkar, D. (Contributor), Schäfer, L. U. (Contributor), Schmid, M. F. (Contributor), Schröder, G. F. (Contributor), Shekhar, M. (Contributor), Si, D. (Contributor), Singharoy, A. (Contributor), Terashi, G. (Contributor), Terwilliger, T. C. (Contributor), Vaiana, A. (Contributor), Wang, L. (Contributor), Wankowicz, S. A. (Contributor), Williams, C. J. (Contributor), Winn, M. (Contributor), Wu, T. (Contributor), Yu, X. (Contributor), Zhang, K. (Contributor), Berman, H. M. (Contributor) & Chiu, W. (Contributor), Zenodo, 2020
DOI: 10.5281/zenodo.4148789, https://zenodo.org/record/4148789
Dataset
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Molecular dynamics simulations in: High-resolution structures with bound Mn2+ and Cd2+ map the metal import pathway in an Nramp transporter
Wilson, E. (Contributor), Berry, S. (Contributor), Shekhar, M. (Contributor), Gaudet, R. (Contributor) & Singharoy, A. (Contributor), Zenodo, Nov 17 2022
DOI: 10.5061/dryad.tx95x6b2b, https://zenodo.org/records/7332182
Dataset
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Functional Pathways of Biomolecules Retrieved from Single-particle Snapshots - Frame 35 - State 4 (S4)
Dashti, A. (Contributor), Mashayekhi, G. (Contributor), Shekhar, M. (Contributor), Ben Hail, D. (Contributor), Salah, S. (Contributor), Schwander, P. (Contributor), des Georges, A. (Contributor), Singharoy, A. (Contributor), Frank, J. (Contributor) & Ourmazd, A. (Contributor), Protein Data Bank (PDB), Aug 12 2020
DOI: 10.2210/pdb7JMH/pdb, https://www.wwpdb.org/pdb?id=pdb_00007jmh
Dataset
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3.6A Yeast Vo state3 prime
Roh, S.-H. (Contributor), Shekhar, M. (Contributor), Pintilie, G. (Contributor), Chipot, C. (Contributor), Wilkens, S. (Contributor), Singharoy, A. (Contributor) & Chiu, W. (Contributor), Protein Data Bank (PDB), Nov 4 2020
DOI: 10.2210/pdb6M0S/pdb, https://www.wwpdb.org/pdb?id=pdb_00006m0s
Dataset
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X-ray Structure of Flpp3
Zook, J. (Contributor), Shekhar, M. (Contributor), Hansen, D. (Contributor), Conrad, C. (Contributor), Grant, T. (Contributor), Gupta, C. (Contributor), White, T. (Contributor), Barty, A. (Contributor), Basu, S. (Contributor), Zhao, Y. (Contributor), Zatsepin, N. (Contributor), Ishchenko, A. (Contributor), Batyuk, A. (Contributor), Gati, C. (Contributor), Li, C. (Contributor), Galli, L. (Contributor), Coe, J. (Contributor), Hunter, M. (Contributor), Liang, M. (Contributor), Weierstall, U. (Contributor), Nelson, G. (Contributor), James, D. (Contributor), Stauch, B. (Contributor), Craciunescu, F. (Contributor), Thifault, D. (Contributor), Liu, W. (Contributor), Cherezov, V. (Contributor), Singharoy, A. (Contributor) & Fromme, P. (Contributor), Protein Data Bank (PDB), Feb 26 2020
DOI: 10.2210/pdb6PNY/pdb, https://www.wwpdb.org/pdb?id=pdb_00006pny
Dataset